RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 TRMT10CQ7L0Y3 403 aaKnown RBP7.35□□□□□ -1.23
SCN1A-204ENST00000423058 DNAJC7Q99615 494 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 YIPF2Q9BWQ6 316 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 FAM129AQ9BZQ8 928 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 CNOT10Q9H9A5 744 aaKnown RBP7.35□□□□□ -1.23
SCN1A-204ENST00000423058 NFKBIL1Q9UBC1 381 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-204ENST00000423058 KBTBD13C9JR72 458 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 SGSM2O43147 1006 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 TRAPPC3O43617 180 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 KCNA1Q09470 495 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 AARS2Q5JTZ9 985 aaKnown RBP7.35□□□□□ -1.23
SCN1A-204ENST00000423058 OR6B2Q6IFH4 312 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 ACAD11Q709F0 780 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 PGBD3Q8N328 593 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 OR6B3Q8NGW1 331 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 CNOT6LQ96LI5 555 aaKnown RBP7.35□□□□□ -1.23
SCN1A-204ENST00000423058 MSTO1Q9BUK6 570 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 FOXP1Q9H334 677 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-204ENST00000423058 HAUS4Q9H6D7 363 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 SP110Q9HB58 689 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 ZBTB40Q9NUA8 1239 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 PIM2Q9P1W9 311 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 SEL1LQ9UBV2 794 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 SSH2Q76I76 1423 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 MYH10P35580 1976 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 ATP7AQ04656 1500 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 LRRIQ3A6PVS8 624 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-204ENST00000423058 PSMA2P25787 234 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 GYG1P46976 350 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 VCPP55072 806 aaKnown RBP7.35□□□□□ -1.23
SCN1A-204ENST00000423058 SLMAPQ14BN4 828 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 ADAT2Q7Z6V5 191 aaKnown RBP7.35□□□□□ -1.23
SCN1A-204ENST00000423058 SCN4BQ8IWT1 228 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 SERTAD1Q9UHV2 236 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 IQCA1LA6NCM1 817 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 CDC42EP1Q00587 391 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 TEDDM1Q5T9Z0 273 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 PPP1R13BQ96KQ4 1090 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 C2orf40Q9H1Z8 148 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 PALD1Q9ULE6 856 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 TNKSO95271 1327 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 GOLGA8TH3BQL2 631 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 AP3B1O00203 1094 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 ARHGEF9O43307 516 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 GOLGA8HP0CJ92 632 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 MFN1Q8IWA4 741 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 EML4Q9HC35 981 aaKnown RBP7.34□□□□□ -1.23
SCN1A-204ENST00000423058 KLHL8Q9P2G9 620 aaPredicted RBP7.34□□□□□ -1.23
SCN1A-204ENST00000423058 HLA-DPA1P20036 260 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 LAMB3Q13751 1172 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 STXBP2Q15833 593 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 CCDC184Q52MB2 194 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 MORC4Q8TE76 937 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 PYROXD1Q8WU10 500 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 TM6SF1Q9BZW5 370 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 UBE2TQ9NPD8 197 aaPredicted RBP7.34□□□□□ -1.23
SCN1A-204ENST00000423058 PRDM5Q9NQX1 630 aaPredicted RBP7.34□□□□□ -1.23
SCN1A-204ENST00000423058 CAPN11Q9UMQ6 739 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 LOC102724428A0A0B4J2F2 783 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 KPNA7A9QM74 516 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 AARSP49588 968 aaKnown RBP eCLIP7.34□□□□□ -1.23
SCN1A-204ENST00000423058 SIK1P57059 783 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 SPATA1Q5VX52 437 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 ERICH1Q86X53 443 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 PDIK1LQ8N165 341 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 CCDC197Q8NCU1 140 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 HSPH1Q92598 858 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 SUCLG2Q96I99 432 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 TACO1Q9BSH4 297 aaKnown RBP7.34□□□□□ -1.23
SCN1A-204ENST00000423058 KIAA0556O60303 1618 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 NBPF26B4DH59 902 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 MAN1A2O60476 641 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 DYNLT1P63172 113 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 FKBP3Q00688 224 aaKnown RBP7.34□□□□□ -1.23
SCN1A-204ENST00000423058 NFX1Q12986 1120 aaKnown RBP7.34□□□□□ -1.23
SCN1A-204ENST00000423058 THEMIS2Q5TEJ8 643 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 KCNV1Q6PIU1 500 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 DDX53Q86TM3 631 aaKnown RBP7.34□□□□□ -1.23
SCN1A-204ENST00000423058 DPH5Q9H2P9 285 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 ASNSD1Q9NWL6 643 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 PCCAP05165 728 aaPredicted RBP7.34□□□□□ -1.23
SCN1A-204ENST00000423058 CLTAP09496 248 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 MCF2P10911 925 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 KRT4P19013 534 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 ADKP55263 362 aaKnown RBP7.34□□□□□ -1.23
SCN1A-204ENST00000423058 KRT72Q14CN4 511 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 SNCBQ16143 134 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 MAPK6Q16659 721 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 TAGAPQ8N103 731 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 TTC13Q8NBP0 860 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 ZBTB9Q96C00 473 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 SPATA16Q9BXB7 569 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 COPRSQ9NQ92 184 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 RNF14Q9UBS8 474 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 TJP2Q9UDY2 1190 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 GOLGA8IPA6NC78 632 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 PI4K2BG5E9Z4 385 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 PPP1R12AO14974 1030 aaPredicted RBP7.34□□□□□ -1.23
SCN1A-204ENST00000423058 UBXN2AP68543 259 aa7.34□□□□□ -1.23
SCN1A-204ENST00000423058 NR5A1Q13285 461 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms