RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ZMYND10O75800 440 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 CHMLP26374 656 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 ADAM9Q13443 819 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 STXBP2Q15833 593 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 ELMSAN1Q6PJG2 1045 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 BTN2A1Q7KYR7 527 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 TNIP2Q8NFZ5 429 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 FAM161BQ96MY7 647 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 MAGEB5Q9BZ81 275 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 DDAH1O94760 285 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 TJP3O95049 919 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 KRT76Q01546 638 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 LMBR1LQ6UX01 489 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 DTX3LQ8TDB6 740 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 FAM167BQ9BTA0 163 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 SLC7A5P2Q9GIP4 190 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 PLEKHG3A1L390 1219 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 TESPA1A2RU30 521 aaPredicted RBP14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 RIMBP2O15034 1052 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 SEC31AO94979 1220 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 KSR2Q6VAB6 950 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 MLXIPQ9HAP2 919 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 LRRIQ4A6NIV6 560 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 PSMD2Q13200 908 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 HINFPQ9BQA5 517 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 FTOQ9C0B1 505 aaKnown RBP eCLIP14.24□□□□□ -0.133e-11■■■■■ 41.9
CCDC88A-204ENST00000413716 NCOA5Q9HCD5 579 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 PCDHGB4Q9UN71 923 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 NSFL1CQ9UNZ2 370 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 MLH1P40692 756 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 KIAA1755Q5JYT7 1200 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 NT5C1BQ96P26 610 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 SLFNL1Q499Z3 407 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 FAM160B1Q5W0V3 765 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 CASP10Q92851 521 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 SRPK1Q96SB4 655 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 CLCA2Q9UQC9 943 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 CPXCR1Q8N123 301 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 SIX6OS1Q8N1H7 587 aa14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 RPAP3Q9H6T3 665 aaPredicted RBP14.24□□□□□ -0.13
CCDC88A-204ENST00000413716 TBC1D9BQ66K14 1250 aa14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 ARHGEF25Q86VW2 580 aa14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 STON1Q9Y6Q2 735 aa14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 TMC5Q6UXY8 1006 aa14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 CASP14P31944 242 aa14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 XKR9Q5GH70 373 aa14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 TGS1Q96RS0 853 aaKnown RBP14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 HNRNPDLO14979 420 aaKnown RBP14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 ZYXQ15942 572 aaKnown RBP14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 RNF139Q8WU17 664 aa14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 ELAC2Q9BQ52 826 aaKnown RBP14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 QKIQ96PU8 341 aaKnown RBP eCLIP14.23□□□□□ -0.131e-7■■■■■ 38.2
CCDC88A-204ENST00000413716 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.23□□□□□ -0.137e-12■□□□□ 8.9
CCDC88A-204ENST00000413716 HPCAL4Q9UM19 191 aa14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 ARL2BPQ9Y2Y0 163 aa14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 RWDD3Q9Y3V2 267 aa14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 NOVA2Q9UNW9 492 aaKnown RBP14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 OSCARQ8IYS5 282 aa14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 RAB42Q8N4Z0 105 aa14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 CCDC127Q96BQ5 260 aa14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 NARS2Q96I59 477 aaKnown RBP14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 CUL7Q14999 1698 aa14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 MSH6P52701 1360 aa14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 TSC22D2O75157 780 aa14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 ADCK5Q3MIX3 580 aa14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 CASS4Q9NQ75 786 aa14.23□□□□□ -0.13
CCDC88A-204ENST00000413716 MAP3K15Q6ZN16 1313 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 ENC1O14682 589 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 ANGPT2O15123 496 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 RETREG2Q8NC44 543 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 CHMP1BQ7LBR1 199 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 PCDHA12Q9UN75 941 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 FAF2Q96CS3 445 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 CLEC4MQ9H2X3 399 aaPredicted RBP14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 CUEDC2Q9H467 287 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 ITGAXP20702 1163 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 TCIRG1Q13488 830 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 TRIM25Q14258 630 aaKnown RBP14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 EMBQ6PCB8 327 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 C11orf88Q6PI97 169 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 PLAAQ9Y263 795 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 SPDYE5A6NIY4 337 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 SUPT3HB4E1H0 165 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 SPDYE7PQ495Y7 208 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 HSPA2P54652 639 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 ADALQ6DHV7 355 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 RWDD4Q6NW29 188 aaKnown RBP14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 SYNGAP1Q96PV0 1343 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 DTNBO60941 627 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 TECP42680 631 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 ARL4CP56559 192 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 NSMFQ6X4W1 530 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 TERB1Q8NA31 727 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 CNOT6LQ96LI5 555 aaKnown RBP14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 GCOM2Q9BZD3 368 aaPredicted RBP14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 GJA3Q9Y6H8 435 aa14.22□□□□□ -0.13
CCDC88A-204ENST00000413716 PODXLO00592 558 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 CAV1Q03135 178 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 DDIASQ8IXT1 998 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms