RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 PAPPAQ13219 1627 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 TMEM88BA6NKF7 163 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 USP2O75604 605 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-211ENST00000413186 DGAT1O75907 488 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 TGFB3P10600 412 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 ZSCAN20P17040 1043 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-211ENST00000413186 RBM10P98175 930 aaKnown RBP9.33□□□□□ -0.92
SYNE1-211ENST00000413186 GBP6Q6ZN66 633 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 SH3BP5LQ7L8J4 393 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 GRAMD1CQ8IYS0 662 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 LMBR1Q8WVP7 490 aa9.33□□□□□ -0.92
SYNE1-211ENST00000413186 MOV10L1Q9BXT6 1211 aaKnown RBP9.33□□□□□ -0.92
SYNE1-211ENST00000413186 MAGEB2O15479 319 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 TMEM191BP0C7N4 346 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 RPA1P27694 616 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 ERVK-9P63128 1117 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 ERVK-24P63145 666 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 CKAP4Q07065 602 aaKnown RBP9.32□□□□□ -0.92
SYNE1-211ENST00000413186 NIPA1Q7RTP0 329 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 NAA15Q9BXJ9 866 aaKnown RBP9.32□□□□□ -0.92
SYNE1-211ENST00000413186 CPA4Q9UI42 421 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 SMIM22K7EJ46 135 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 NFIBO00712 420 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 DYNC1LI2O43237 492 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-211ENST00000413186 LDHAP00338 332 aaKnown RBP9.32□□□□□ -0.92
SYNE1-211ENST00000413186 PEX3P56589 373 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 GNG11P61952 73 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 ARID5AQ03989 594 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 BMS1Q14692 1282 aaKnown RBP9.32□□□□□ -0.92
SYNE1-211ENST00000413186 TRIM63Q969Q1 353 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 FAM81BQ96LP2 452 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 NOX5Q96PH1 765 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 ANKFY1Q9P2R3 1169 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 CYTH3O43739 400 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 RARBP10826 455 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 CACNB1Q02641 598 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-211ENST00000413186 KIF5AQ12840 1032 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 MAPK6Q16659 721 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 GAS2L3Q86XJ1 694 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.32□□□□□ -0.92
SYNE1-211ENST00000413186 RPS6KC1Q96S38 1066 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 POLR3CQ9BUI4 534 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-211ENST00000413186 KIAA1586Q9HCI6 787 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 PXMP2Q9NR77 195 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 ODF2LQ9ULJ1 636 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 NKRFO15226 690 aaKnown RBP eCLIP9.32□□□□□ -0.92
SYNE1-211ENST00000413186 KRT86O43790 486 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 SLU7O95391 586 aaKnown RBP9.32□□□□□ -0.92
SYNE1-211ENST00000413186 KRT19P08727 400 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 SNHG28P0DPA3 235 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 SLC9C1Q4G0N8 1177 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 Q4G0T1 1027 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 SPECC1LQ69YQ0 1117 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 FAM186BQ8IYM0 893 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 CCDC51Q96ER9 411 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 ANKEF1Q9NU02 776 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 FANCLQ9NW38 375 aa9.32□□□□□ -0.92
SYNE1-211ENST00000413186 COL1A1P02452 1464 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-211ENST00000413186 A0A1W2PRG0 241 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 SOCS7O14512 581 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 KRT5P13647 590 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 YWHABP31946 246 aaKnown RBP9.31□□□□□ -0.92
SYNE1-211ENST00000413186 CACTINQ8WUQ7 758 aaKnown RBP9.31□□□□□ -0.92
SYNE1-211ENST00000413186 NLRP4Q96MN2 994 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 FAM49AQ9H0Q0 323 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-211ENST00000413186 RNF216Q9NWF9 866 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-211ENST00000413186 ANKRD36CQ5JPF3 1778 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 HOXC6P09630 235 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 SRGAP2CP0DJJ0 459 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 SCP2P22307 547 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 RFC5P40937 340 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 CPT1AP50416 773 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 KCNB1Q14721 858 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 DPCR1Q3MIW9 517 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 CATSPER4Q7RTX7 472 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 PLCD3Q8N3E9 789 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 CEP112Q8N8E3 955 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 SHCBP1Q8NEM2 672 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 C1orf112Q9NSG2 853 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 PP2D1A8MPX8 630 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 KIF3CO14782 793 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 FOXP2O15409 715 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 ARHGAP6O43182 974 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 C6orf222P0C671 652 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-211ENST00000413186 TNFAIP3P21580 790 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 CA8P35219 290 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 EFNA5P52803 228 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 ASIC2Q16515 512 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 WHAMMQ8TF30 809 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 L3MBTL3Q96JM7 780 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-211ENST00000413186 CNOT6LQ96LI5 555 aaKnown RBP9.31□□□□□ -0.92
SYNE1-211ENST00000413186 FAM193BQ96PV7 902 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-211ENST00000413186 CCDC94Q9BW85 323 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-211ENST00000413186 TMEM60Q9H2L4 133 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 THAP9Q9H5L6 903 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 ERAP1Q9NZ08 941 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 SCN7AQ01118 1682 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 MSH4O15457 936 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 KRT9P35527 623 aa9.31□□□□□ -0.92
SYNE1-211ENST00000413186 TNFAIP2Q03169 654 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms