RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 NCBP1Q09161 790 aaKnown RBP6.35□□□□□ -1.39
CLK1-202ENST00000409403 MAP4K2Q12851 820 aa6.35□□□□□ -1.39
CLK1-202ENST00000409403 GPS2Q13227 327 aa6.35□□□□□ -1.39
CLK1-202ENST00000409403 DPY19L1Q2PZI1 675 aa6.35□□□□□ -1.39
CLK1-202ENST00000409403 DALRD3Q5D0E6 543 aaKnown RBP6.35□□□□□ -1.39
CLK1-202ENST00000409403 CRTC3Q6UUV7 619 aa6.35□□□□□ -1.39
CLK1-202ENST00000409403 TOM1L2Q6ZVM7 507 aa6.35□□□□□ -1.39
CLK1-202ENST00000409403 FILIP1Q7Z7B0 1213 aa6.35□□□□□ -1.39
CLK1-202ENST00000409403 TSPYL5Q86VY4 417 aaPredicted RBP6.35□□□□□ -1.39
CLK1-202ENST00000409403 WDR63Q8IWG1 891 aa6.35□□□□□ -1.39
CLK1-202ENST00000409403 TCTN2Q96GX1 697 aa6.35□□□□□ -1.39
CLK1-202ENST00000409403 SPC25Q9HBM1 224 aa6.35□□□□□ -1.39
CLK1-202ENST00000409403 FEZ2Q9UHY8 353 aaPredicted RBP6.35□□□□□ -1.39
CLK1-202ENST00000409403 TRPM7Q96QT4 1865 aa6.35□□□□□ -1.39
CLK1-202ENST00000409403 CYP26A1O43174 497 aa6.34□□□□□ -1.39
CLK1-202ENST00000409403 DLX3O60479 287 aa6.34□□□□□ -1.39
CLK1-202ENST00000409403 DNAJC6O75061 913 aa6.34□□□□□ -1.39
CLK1-202ENST00000409403 CPP00450 1065 aa6.34□□□□□ -1.39
CLK1-202ENST00000409403 SCG5P05408 212 aa6.34□□□□□ -1.39
CLK1-202ENST00000409403 SNRPB2P08579 225 aaKnown RBP6.34□□□□□ -1.39
CLK1-202ENST00000409403 DPEP1P16444 411 aa6.34□□□□□ -1.39
CLK1-202ENST00000409403 BMP8BP34820 402 aa6.34□□□□□ -1.39
CLK1-202ENST00000409403 MCM2P49736 904 aa6.34□□□□□ -1.39
CLK1-202ENST00000409403 CBX2Q14781 532 aaPredicted RBP6.34□□□□□ -1.39
CLK1-202ENST00000409403 SF1Q15637 639 aaKnown RBP6.34□□□□□ -1.39
CLK1-202ENST00000409403 FNDC3BQ53EP0 1204 aaKnown RBP6.34□□□□□ -1.39
CLK1-202ENST00000409403 NKAPLQ5M9Q1 402 aa6.34□□□□□ -1.39
CLK1-202ENST00000409403 ZKSCAN2Q63HK3 967 aa6.34□□□□□ -1.39
CLK1-202ENST00000409403 THAP5Q7Z6K1 395 aa6.34□□□□□ -1.39
CLK1-202ENST00000409403 CCDC112Q8NEF3 446 aa6.34□□□□□ -1.39
CLK1-202ENST00000409403 KIAA1524Q8TCG1 905 aa6.34□□□□□ -1.39
CLK1-202ENST00000409403 NCAPGQ9BPX3 1015 aa6.34□□□□□ -1.39
CLK1-202ENST00000409403 MRPL4Q9BYD3 311 aaKnown RBP6.34□□□□□ -1.39
CLK1-202ENST00000409403 IFT57Q9NWB7 429 aa6.34□□□□□ -1.39
CLK1-202ENST00000409403 PAPPA2Q9BXP8 1791 aa6.34□□□□□ -1.39
CLK1-202ENST00000409403 C4AP0C0L4 1744 aa6.34□□□□□ -1.4
CLK1-202ENST00000409403 H3BS24 57 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 APAF1O14727 1248 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 RFPL3O75679 317 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 CD3EP07766 207 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 CAPN2P17655 700 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 CYP2C19P33261 490 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 NOP2P46087 812 aaKnown RBP6.33□□□□□ -1.4
CLK1-202ENST00000409403 TPM4P67936 248 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 NUCB1Q02818 461 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 PABPC4Q13310 644 aaKnown RBP eCLIP6.33□□□□□ -1.4
CLK1-202ENST00000409403 PTPROQ16827 1216 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 C21orf62-AS1Q17RA5 79 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 RSPO4Q2I0M5 234 aaPredicted RBP6.33□□□□□ -1.4
CLK1-202ENST00000409403 AMIGO3Q86WK7 504 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 ZDHHC13Q8IUH4 622 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 TMEM145Q8NBT3 493 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 GPT2Q8TD30 523 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 NINJ1Q92982 152 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 CAPNS2Q96L46 248 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 HSPA12BQ96MM6 686 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 NOL10Q9BSC4 688 aaKnown RBP6.33□□□□□ -1.4
CLK1-202ENST00000409403 CHMP4AQ9BY43 222 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 PIM2Q9P1W9 311 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 PLAGL2Q9UPG8 496 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 ANKRD50Q9ULJ7 1429 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 STXBP3O00186 592 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 ADCY5O95622 1261 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 CALRP27797 417 aaKnown RBP6.33□□□□□ -1.4
CLK1-202ENST00000409403 TPP2P29144 1249 aaPredicted RBP6.33□□□□□ -1.4
CLK1-202ENST00000409403 ECI1P42126 302 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 LMOD3Q0VAK6 560 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 SCRN1Q12765 414 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 IFI16Q16666 785 aaKnown RBP6.33□□□□□ -1.4
CLK1-202ENST00000409403 CCDC183Q5T5S1 534 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 ICE2Q659A1 982 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 CYP4F22Q6NT55 531 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 CASC1Q6TDU7 716 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 NIM1KQ8IY84 436 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 ANKRD13AQ8IZ07 590 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 PLD6Q8N2A8 252 aaKnown RBP6.33□□□□□ -1.4
CLK1-202ENST00000409403 MNS1Q8NEH6 495 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 ZCRB1Q8TBF4 217 aaKnown RBP6.33□□□□□ -1.4
CLK1-202ENST00000409403 NETO1Q8TDF5 533 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 MFSD3Q96ES6 412 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 MCMBPQ9BTE3 642 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 ZSWIM5Q9P217 1185 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 ABT1Q9ULW3 272 aaKnown RBP6.33□□□□□ -1.4
CLK1-202ENST00000409403 RNF112Q9ULX5 631 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 BACE2Q9Y5Z0 518 aa6.33□□□□□ -1.4
CLK1-202ENST00000409403 V9GYY5 206 aaPredicted RBP6.33□□□□□ -1.4
CLK1-202ENST00000409403 PPIP5K1Q6PFW1 1433 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 TMEM265A0A087WTH1 108 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 KIF2AO00139 706 aaPredicted RBP6.32□□□□□ -1.4
CLK1-202ENST00000409403 EXOC5O00471 708 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 AURKAO14965 403 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 DYRK3O43781 588 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 KIF1CO43896 1103 aaKnown RBP6.32□□□□□ -1.4
CLK1-202ENST00000409403 C6orf222P0C671 652 aaPredicted RBP6.32□□□□□ -1.4
CLK1-202ENST00000409403 FOSL1P15407 271 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 VAV1P15498 845 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 MASP1P48740 699 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 PCBP3P57721 371 aaKnown RBP6.32□□□□□ -1.4
CLK1-202ENST00000409403 GABREP78334 506 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 PRSS53Q2L4Q9 553 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms