RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 NAALADL2Q58DX5 795 aa20.18■□□□□ 0.82
SDC1-203ENST00000403076 KANK3Q6NY19 840 aa20.18■□□□□ 0.82
SDC1-203ENST00000403076 SV2BQ7L1I2 683 aa20.18■□□□□ 0.82
SDC1-203ENST00000403076 KCNK18Q7Z418 384 aa20.18■□□□□ 0.82
SDC1-203ENST00000403076 HOOK1Q9UJC3 728 aaKnown RBP20.18■□□□□ 0.82
SDC1-203ENST00000403076 MAFBQ9Y5Q3 323 aaPredicted RBP20.18■□□□□ 0.82
SDC1-203ENST00000403076 EMSYQ7Z589 1322 aa20.18■□□□□ 0.82
SDC1-203ENST00000403076 SYNRGQ9UMZ2 1314 aa20.18■□□□□ 0.82
SDC1-203ENST00000403076 IGSF9BQ9UPX0 1349 aa20.18■□□□□ 0.82
SDC1-203ENST00000403076 ZBTB39O15060 712 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 LYPLA2O95372 231 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 MYL3P08590 195 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 AFMP43652 599 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 IRX5P78411 483 aaPredicted RBP20.17■□□□□ 0.82
SDC1-203ENST00000403076 PRKCEQ02156 737 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 MCM6Q14566 821 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 CAMK4Q16566 473 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 GNASQ5JWF2 1037 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 CAVIN1Q6NZI2 390 aaKnown RBP20.17■□□□□ 0.82
SDC1-203ENST00000403076 OTUD6AQ7L8S5 288 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 PLPPR4Q7Z2D5 763 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 TRIM50Q86XT4 487 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 AFAP1L1Q8TED9 768 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.17■□□□□ 0.82
SDC1-203ENST00000403076 NUP62CLQ9H1M0 184 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 NRBP2Q9NSY0 501 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 BLOC1S4Q9NUP1 217 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 ZNF862O60290 1169 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 ZEB2O60315 1214 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 EYA4O95677 639 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 PLA2G4BP0C869 781 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 ZNF286BP0CG31 522 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 MARK3P27448 753 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 YWHABP31946 246 aaKnown RBP20.17■□□□□ 0.82
SDC1-203ENST00000403076 XKR3Q5GH77 459 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 LRRC15Q8TF66 581 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 STAMQ92783 540 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 UNC93B1Q9H1C4 597 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 UPF3AQ9H1J1 476 aaKnown RBP20.17■□□□□ 0.82
SDC1-203ENST00000403076 BHMT2Q9H2M3 363 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 CLSTN2Q9H4D0 955 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 MAGEF1Q9HAY2 307 aa20.17■□□□□ 0.82
SDC1-203ENST00000403076 ZNF215Q9UL58 517 aaPredicted RBP20.17■□□□□ 0.82
SDC1-203ENST00000403076 ARHGEF35A5YM69 484 aa20.16■□□□□ 0.82
SDC1-203ENST00000403076 XRCC6P12956 609 aaKnown RBP eCLIP20.16■□□□□ 0.82
SDC1-203ENST00000403076 AMPD3Q01432 767 aa20.16■□□□□ 0.82
SDC1-203ENST00000403076 XKR9Q5GH70 373 aa20.16■□□□□ 0.82
SDC1-203ENST00000403076 PAGE5Q96GU1 130 aa20.16■□□□□ 0.82
SDC1-203ENST00000403076 FAM167AQ96KS9 214 aa20.16■□□□□ 0.82
SDC1-203ENST00000403076 TNMDQ9H2S6 317 aa20.16■□□□□ 0.82
SDC1-203ENST00000403076 ERAP1Q9NZ08 941 aa20.16■□□□□ 0.82
SDC1-203ENST00000403076 SEPT9Q9UHD8 586 aaPredicted RBP20.16■□□□□ 0.82
SDC1-203ENST00000403076 MYADML2A6NDP7 307 aa20.15■□□□□ 0.82
SDC1-203ENST00000403076 OATP04181 439 aa20.15■□□□□ 0.82
SDC1-203ENST00000403076 HOXD8P13378 290 aaPredicted RBP20.15■□□□□ 0.82
SDC1-203ENST00000403076 CCL5P13501 91 aa20.15■□□□□ 0.82
SDC1-203ENST00000403076 SLC26A2P50443 739 aa20.15■□□□□ 0.82
SDC1-203ENST00000403076 CHMP4BP1P59074 171 aa20.15■□□□□ 0.82
SDC1-203ENST00000403076 MTFR1Q15390 333 aa20.15■□□□□ 0.82
SDC1-203ENST00000403076 CCDC183Q5T5S1 534 aa20.15■□□□□ 0.82
SDC1-203ENST00000403076 GRAMD1CQ8IYS0 662 aa20.15■□□□□ 0.82
SDC1-203ENST00000403076 LRRC27Q9C0I9 530 aa20.15■□□□□ 0.82
SDC1-203ENST00000403076 RNF208Q9H0X6 261 aa20.15■□□□□ 0.82
SDC1-203ENST00000403076 PRDM10Q9NQV6 1147 aa20.15■□□□□ 0.82
SDC1-203ENST00000403076 ANKEF1Q9NU02 776 aa20.15■□□□□ 0.82
SDC1-203ENST00000403076 TRPC6Q9Y210 931 aa20.15■□□□□ 0.82
SDC1-203ENST00000403076 H3BRB1 525 aa20.14■□□□□ 0.81
SDC1-203ENST00000403076 KPNA6O60684 536 aa20.14■□□□□ 0.81
SDC1-203ENST00000403076 ATP4AP20648 1035 aa20.14■□□□□ 0.81
SDC1-203ENST00000403076 RNF180Q86T96 592 aa20.14■□□□□ 0.81
SDC1-203ENST00000403076 GPBP1Q86WP2 473 aa20.14■□□□□ 0.81
SDC1-203ENST00000403076 SYT2Q8N9I0 419 aaPredicted RBP20.14■□□□□ 0.81
SDC1-203ENST00000403076 C16orf70Q9BSU1 422 aa20.14■□□□□ 0.81
SDC1-203ENST00000403076 TUT1Q9H6E5 874 aaKnown RBP20.14■□□□□ 0.81
SDC1-203ENST00000403076 TMEM63CQ9P1W3 806 aa20.14■□□□□ 0.81
SDC1-203ENST00000403076 DBR1Q9UK59 544 aaKnown RBP20.14■□□□□ 0.81
SDC1-203ENST00000403076 MYH9P35579 1960 aaKnown RBP20.14■□□□□ 0.81
SDC1-203ENST00000403076 TMEM150BA6NC51 233 aa20.13■□□□□ 0.81
SDC1-203ENST00000403076 CTAGE5O15320 804 aa20.13■□□□□ 0.81
SDC1-203ENST00000403076 ADAMTS4O75173 837 aa20.13■□□□□ 0.81
SDC1-203ENST00000403076 KRT18P05783 430 aaKnown RBP20.13■□□□□ 0.81
SDC1-203ENST00000403076 NPEPPSP55786 919 aa20.13■□□□□ 0.81
SDC1-203ENST00000403076 PLCB4Q15147 1175 aa20.13■□□□□ 0.81
SDC1-203ENST00000403076 PLA2G4FQ68DD2 849 aa20.13■□□□□ 0.81
SDC1-203ENST00000403076 ANO5Q75V66 913 aa20.13■□□□□ 0.81
SDC1-203ENST00000403076 BBXQ8WY36 941 aaPredicted RBP20.13■□□□□ 0.81
SDC1-203ENST00000403076 CEP170P1Q96L14 293 aa20.13■□□□□ 0.81
SDC1-203ENST00000403076 SH2D3AQ9BRG2 576 aa20.13■□□□□ 0.81
SDC1-203ENST00000403076 BMP2KQ9NSY1 1161 aaPredicted RBP20.13■□□□□ 0.81
SDC1-203ENST00000403076 KBTBD4Q9NVX7 518 aa20.13■□□□□ 0.81
SDC1-203ENST00000403076 STBD1O95210 358 aa20.12■□□□□ 0.81
SDC1-203ENST00000403076 POSTNQ15063 836 aa20.12■□□□□ 0.81
SDC1-203ENST00000403076 MTERF2Q49AM1 385 aa20.12■□□□□ 0.81
SDC1-203ENST00000403076 PCSK9Q8NBP7 692 aaKnown RBP20.12■□□□□ 0.81
SDC1-203ENST00000403076 ATP8B4Q8TF62 1192 aa20.12■□□□□ 0.81
SDC1-203ENST00000403076 DEFB118Q96PH6 123 aa20.12■□□□□ 0.81
SDC1-203ENST00000403076 BLZF1Q9H2G9 400 aa20.12■□□□□ 0.81
SDC1-203ENST00000403076 GTPBP6O43824 516 aaPredicted RBP20.12■□□□□ 0.81
SDC1-203ENST00000403076 HBP1O60381 514 aa20.12■□□□□ 0.81
SDC1-203ENST00000403076 RARRES1P49788 294 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms