RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 SMARCA1P28370 1054 aa18.48■□□□□ 0.55
CUX2-202ENST00000397643 PTPN5P54829 565 aa18.48■□□□□ 0.55
CUX2-202ENST00000397643 TMEM62Q0P6H9 643 aa18.48■□□□□ 0.55
CUX2-202ENST00000397643 MTMR1Q13613 665 aa18.48■□□□□ 0.55
CUX2-202ENST00000397643 SART3Q15020 963 aaKnown RBP18.48■□□□□ 0.55
CUX2-202ENST00000397643 RALYLQ86SE5 291 aaKnown RBP18.48■□□□□ 0.55
CUX2-202ENST00000397643 RBM23Q86U06 439 aaKnown RBP18.48■□□□□ 0.55
CUX2-202ENST00000397643 VN1R2Q8NFZ6 395 aa18.48■□□□□ 0.55
CUX2-202ENST00000397643 NCOA7Q8NI08 942 aa18.48■□□□□ 0.55
CUX2-202ENST00000397643 RRP36Q96EU6 259 aaKnown RBP18.48■□□□□ 0.55
CUX2-202ENST00000397643 SNX27Q96L92 541 aa18.48■□□□□ 0.55
CUX2-202ENST00000397643 LY9Q9HBG7 655 aa18.48■□□□□ 0.55
CUX2-202ENST00000397643 MYO15AQ9UKN7 3530 aa18.48■□□□□ 0.55
CUX2-202ENST00000397643 CFAP54Q96N23 3096 aa18.48■□□□□ 0.55
CUX2-202ENST00000397643 PLEKHA8P1O95397 391 aa18.47■□□□□ 0.55
CUX2-202ENST00000397643 RBM10P98175 930 aaKnown RBP18.47■□□□□ 0.55
CUX2-202ENST00000397643 IER5Q5VY09 327 aa18.47■□□□□ 0.55
CUX2-202ENST00000397643 ZNF654Q8IZM8 581 aa18.47■□□□□ 0.55
CUX2-202ENST00000397643 SRBD1Q8N5C6 995 aaKnown RBP18.47■□□□□ 0.55
CUX2-202ENST00000397643 ATP8B4Q8TF62 1192 aa18.47■□□□□ 0.55
CUX2-202ENST00000397643 TRAPPC12Q8WVT3 735 aa18.47■□□□□ 0.55
CUX2-202ENST00000397643 SUSD6Q92537 303 aa18.47■□□□□ 0.55
CUX2-202ENST00000397643 FNDC1Q4ZHG4 1894 aaPredicted RBP18.47■□□□□ 0.55
CUX2-202ENST00000397643 KDM3AQ9Y4C1 1321 aa18.47■□□□□ 0.55
CUX2-202ENST00000397643 DDAH1O94760 285 aa18.46■□□□□ 0.55
CUX2-202ENST00000397643 STAG3L1P0CL83 205 aa18.46■□□□□ 0.55
CUX2-202ENST00000397643 PAK2Q13177 524 aa18.46■□□□□ 0.55
CUX2-202ENST00000397643 PKN1Q16512 942 aa18.46■□□□□ 0.55
CUX2-202ENST00000397643 UBE2SQ16763 222 aa18.46■□□□□ 0.55
CUX2-202ENST00000397643 FBXL6Q8N531 539 aa18.46■□□□□ 0.55
CUX2-202ENST00000397643 CTCFLQ8NI51 663 aaPredicted RBP18.46■□□□□ 0.55
CUX2-202ENST00000397643 ASIC4Q96FT7 647 aa18.46■□□□□ 0.55
CUX2-202ENST00000397643 PHF7Q9BWX1 381 aaPredicted RBP18.46■□□□□ 0.55
CUX2-202ENST00000397643 PSTPIP2Q9H939 334 aa18.46■□□□□ 0.55
CUX2-202ENST00000397643 JPH1Q9HDC5 661 aaPredicted RBP18.46■□□□□ 0.55
CUX2-202ENST00000397643 JADE2Q9NQC1 790 aa18.46■□□□□ 0.55
CUX2-202ENST00000397643 PCDHA2Q9Y5H9 948 aa18.46■□□□□ 0.55
CUX2-202ENST00000397643 ZFHX2Q9C0A1 2572 aaPredicted RBP18.45■□□□□ 0.54
CUX2-202ENST00000397643 MGEA5O60502 916 aa18.45■□□□□ 0.54
CUX2-202ENST00000397643 PDE4AP27815 886 aa18.45■□□□□ 0.54
CUX2-202ENST00000397643 KIF5BP33176 963 aa18.45■□□□□ 0.54
CUX2-202ENST00000397643 COL9A3Q14050 684 aaPredicted RBP18.45■□□□□ 0.54
CUX2-202ENST00000397643 PLCB4Q15147 1175 aa18.45■□□□□ 0.54
CUX2-202ENST00000397643 SUGP1Q8IWZ8 645 aaKnown RBP18.45■□□□□ 0.54
CUX2-202ENST00000397643 CMTR1Q8N1G2 835 aaKnown RBP18.45■□□□□ 0.54
CUX2-202ENST00000397643 CELF4Q9BZC1 486 aaKnown RBP18.45■□□□□ 0.54
CUX2-202ENST00000397643 SEC63Q9UGP8 760 aaKnown RBP18.45■□□□□ 0.54
CUX2-202ENST00000397643 DMDP11532 3685 aa18.44■□□□□ 0.54
CUX2-202ENST00000397643 PER2O15055 1255 aa18.44■□□□□ 0.54
CUX2-202ENST00000397643 ATF7P17544 494 aaPredicted RBP18.44■□□□□ 0.54
CUX2-202ENST00000397643 SARSP49591 514 aaKnown RBP18.44■□□□□ 0.54
CUX2-202ENST00000397643 VCPP55072 806 aaKnown RBP18.44■□□□□ 0.54
CUX2-202ENST00000397643 UBE3AQ05086 875 aa18.44■□□□□ 0.54
CUX2-202ENST00000397643 SIGLEC14Q08ET2 396 aa18.44■□□□□ 0.54
CUX2-202ENST00000397643 TMEM266Q2M3C6 531 aa18.44■□□□□ 0.54
CUX2-202ENST00000397643 TTC22Q5TAA0 569 aa18.44■□□□□ 0.54
CUX2-202ENST00000397643 RPGRIP1Q96KN7 1286 aa18.44■□□□□ 0.54
CUX2-202ENST00000397643 PRRX2Q99811 253 aa18.44■□□□□ 0.54
CUX2-202ENST00000397643 LZTS2Q9BRK4 669 aa18.44■□□□□ 0.54
CUX2-202ENST00000397643 TLE6Q9H808 572 aa18.44■□□□□ 0.54
CUX2-202ENST00000397643 HCSTQ9UBK5 93 aa18.44■□□□□ 0.54
CUX2-202ENST00000397643 TRPC6Q9Y210 931 aa18.44■□□□□ 0.54
CUX2-202ENST00000397643 SMIM35A0A1B0GVV1 85 aa18.43■□□□□ 0.54
CUX2-202ENST00000397643 M0QZ92 97 aa18.43■□□□□ 0.54
CUX2-202ENST00000397643 MAFGO15525 162 aa18.43■□□□□ 0.54
CUX2-202ENST00000397643 PPFIA3O75145 1194 aa18.43■□□□□ 0.54
CUX2-202ENST00000397643 CHMLP26374 656 aa18.43■□□□□ 0.54
CUX2-202ENST00000397643 KCNC3Q14003 757 aa18.43■□□□□ 0.54
CUX2-202ENST00000397643 DUSP6Q16828 381 aa18.43■□□□□ 0.54
CUX2-202ENST00000397643 CYP2W1Q8TAV3 490 aa18.43■□□□□ 0.54
CUX2-202ENST00000397643 ERVK-5Q9HDB9 667 aa18.43■□□□□ 0.54
CUX2-202ENST00000397643 TLR9Q9NR96 1032 aa18.43■□□□□ 0.54
CUX2-202ENST00000397643 KCNH7Q9NS40 1196 aa18.43■□□□□ 0.54
CUX2-202ENST00000397643 SLC9A2Q9UBY0 812 aa18.43■□□□□ 0.54
CUX2-202ENST00000397643 PCDHA6Q9UN73 950 aa18.43■□□□□ 0.54
CUX2-202ENST00000397643 PCDHA8Q9Y5H6 950 aa18.43■□□□□ 0.54
CUX2-202ENST00000397643 hCG_1642624A0A1W2PR95 340 aa18.42■□□□□ 0.54
CUX2-202ENST00000397643 FSCN2O14926 492 aa18.42■□□□□ 0.54
CUX2-202ENST00000397643 ERVFC1P60507 584 aa18.42■□□□□ 0.54
CUX2-202ENST00000397643 ACTR2P61160 394 aa18.42■□□□□ 0.54
CUX2-202ENST00000397643 KRT76Q01546 638 aa18.42■□□□□ 0.54
CUX2-202ENST00000397643 MTHFD1LQ6UB35 978 aa18.42■□□□□ 0.54
CUX2-202ENST00000397643 PLPPR4Q7Z2D5 763 aa18.42■□□□□ 0.54
CUX2-202ENST00000397643 TMEM40Q8WWA1 233 aa18.42■□□□□ 0.54
CUX2-202ENST00000397643 CDCA3Q99618 268 aaPredicted RBP18.42■□□□□ 0.54
CUX2-202ENST00000397643 AZI2Q9H6S1 392 aa18.42■□□□□ 0.54
CUX2-202ENST00000397643 NFASCO94856 1347 aa18.42■□□□□ 0.54
CUX2-202ENST00000397643 SPDYE3A6NKU9 549 aa18.41■□□□□ 0.54
CUX2-202ENST00000397643 SGSM2O43147 1006 aa18.41■□□□□ 0.54
CUX2-202ENST00000397643 ST18O60284 1047 aa18.41■□□□□ 0.54
CUX2-202ENST00000397643 FGF18O76093 207 aa18.41■□□□□ 0.54
CUX2-202ENST00000397643 RXRAP19793 462 aa18.41■□□□□ 0.54
CUX2-202ENST00000397643 GNAQP50148 359 aa18.41■□□□□ 0.54
CUX2-202ENST00000397643 ITGB3BPQ13352 177 aaPredicted RBP18.41■□□□□ 0.54
CUX2-202ENST00000397643 PTPN21Q16825 1174 aa18.41■□□□□ 0.54
CUX2-202ENST00000397643 FAM102BQ5T8I3 360 aa18.41■□□□□ 0.54
CUX2-202ENST00000397643 TMEM184AQ6ZMB5 413 aa18.41■□□□□ 0.54
CUX2-202ENST00000397643 NME8Q8N427 588 aa18.41■□□□□ 0.54
CUX2-202ENST00000397643 RUFY2Q8WXA3 655 aa18.41■□□□□ 0.54
CUX2-202ENST00000397643 MAP4K1Q92918 833 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms