RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 POLR2FP61218 127 aaKnown RBP14.32□□□□□ -0.12
USP49-203ENST00000394253 ELAC2Q9BQ52 826 aaKnown RBP14.32□□□□□ -0.12
USP49-203ENST00000394253 SMARCAD1Q9H4L7 1026 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 CCDC134Q9H6E4 229 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 TSPY1Q01534 308 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 TRADDQ15628 312 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 NFRKBQ6P4R8 1299 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 MLPHQ9BV36 600 aaPredicted RBP14.32□□□□□ -0.12
USP49-203ENST00000394253 CXorf56Q9H5V9 222 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 SIX6OS1Q8N1H7 587 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 ICE1Q9Y2F5 2266 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 DNALI1O14645 258 aaPredicted RBP14.32□□□□□ -0.12
USP49-203ENST00000394253 GALNT17Q6IS24 598 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 SH3BP5LQ7L8J4 393 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 DZIP3Q86Y13 1208 aaKnown RBP14.32□□□□□ -0.12
USP49-203ENST00000394253 DDI1Q8WTU0 396 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 GCOM2Q9BZD3 368 aaPredicted RBP14.32□□□□□ -0.12
USP49-203ENST00000394253 GTSE1Q9NYZ3 720 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 DENND2AQ9ULE3 1009 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 RGS20O76081 388 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 TERF2Q15554 542 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 EME1Q96AY2 570 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 FAM193BQ96PV7 902 aaPredicted RBP14.32□□□□□ -0.12
USP49-203ENST00000394253 EYA3Q99504 573 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 NHEJ1Q9H9Q4 299 aaPredicted RBP14.32□□□□□ -0.12
USP49-203ENST00000394253 USP40Q9NVE5 1235 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 AATFQ9NY61 560 aaKnown RBP eCLIP14.32□□□□□ -0.12
USP49-203ENST00000394253 TRIM49P0CI25 452 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 TRIM49CP0CI26 452 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 KLHL38Q2WGJ6 581 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 FAM102BQ5T8I3 360 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 NAA35Q5VZE5 725 aa14.32□□□□□ -0.12
USP49-203ENST00000394253 NUDT16Q96DE0 195 aaKnown RBP14.32□□□□□ -0.12
USP49-203ENST00000394253 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.32□□□□□ -0.12
USP49-203ENST00000394253 CFTRP13569 1480 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 KIF1BO60333 1816 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 MOCS3O95396 460 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 CHMLP26374 656 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 LAMB3Q13751 1172 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 FAM167BQ9BTA0 163 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 SCN3BQ9NY72 215 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 FAM107AO95990 144 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 ZNF219Q9P2Y4 722 aaPredicted RBP14.31□□□□□ -0.12
USP49-203ENST00000394253 C8orf34Q49A92 452 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 ANKRD36BP1Q96IX9 119 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 PLEKHA8Q96JA3 519 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 RHBDL2Q9NX52 303 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 AURKCQ9UQB9 309 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 GAPVD1Q14C86 1478 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 ADCY1Q08828 1119 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 FOXD4Q12950 439 aaPredicted RBP14.31□□□□□ -0.12
USP49-203ENST00000394253 TRMT44Q8IYL2 757 aaKnown RBP14.31□□□□□ -0.12
USP49-203ENST00000394253 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.31□□□□□ -0.12
USP49-203ENST00000394253 CCDC127Q96BQ5 260 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 HIC2Q96JB3 615 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 ETNK1Q9HBU6 452 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 ERAP1Q9NZ08 941 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 CHPF2Q9P2E5 772 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 ADAM30Q9UKF2 790 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 STX7O15400 261 aaKnown RBP14.31□□□□□ -0.12
USP49-203ENST00000394253 MLH1P40692 756 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 SPATA1Q5VX52 437 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 TTC17Q96AE7 1141 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 DDX39AO00148 427 aaKnown RBP14.31□□□□□ -0.12
USP49-203ENST00000394253 ANGPT2O15123 496 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 PRPSAP2O60256 369 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 DMPKQ09013 629 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 NELFCDQ8IXH7 590 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 ULK4Q96C45 1275 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 H2AFY2Q9P0M6 372 aaPredicted RBP14.31□□□□□ -0.12
USP49-203ENST00000394253 MAP3K15Q6ZN16 1313 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 PNMA6AP0CW24 399 aaPredicted RBP14.31□□□□□ -0.12
USP49-203ENST00000394253 ATP8B2P98198 1209 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 MMRN1Q13201 1228 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 DENND6AQ8IWF6 608 aa14.31□□□□□ -0.12
USP49-203ENST00000394253 LARP4BQ92615 738 aaKnown RBP14.31□□□□□ -0.12
USP49-203ENST00000394253 FTOQ9C0B1 505 aaKnown RBP eCLIP14.31□□□□□ -0.12
USP49-203ENST00000394253 STRNO43815 780 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 C11orf88Q6PI97 169 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 KLHL25Q9H0H3 589 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 KLHL20Q9Y2M5 609 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.3□□□□□ -0.12
USP49-203ENST00000394253 ZBED1O96006 694 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 ARMC3Q5W041 872 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 MCRS1Q96EZ8 462 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 GCNT4Q9P109 453 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 NOVA2Q9UNW9 492 aaKnown RBP14.3□□□□□ -0.12
USP49-203ENST00000394253 NUP107P57740 925 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 C2orf54Q08AI8 447 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 CLEC4FQ8N1N0 589 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 TINF2Q9BSI4 451 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 ARL4CP56559 192 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 KRT27Q7Z3Y8 459 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 LAD1O00515 517 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 HAUS5O94927 633 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 DIS3L2Q8IYB7 885 aaKnown RBP14.3□□□□□ -0.12
USP49-203ENST00000394253 EXOC8Q8IYI6 725 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 C19orf18Q8NEA5 215 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 CALN1Q9BXU9 219 aa14.3□□□□□ -0.12
USP49-203ENST00000394253 SPRTNQ9H040 489 aaPredicted RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 141.5 ms