RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 ZBED4O75132 1171 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 CCND1P24385 295 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 SERPINB10P48595 397 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 SPATA21Q7Z572 469 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 EXT2Q93063 718 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 FAF2Q96CS3 445 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 WDR24Q96S15 920 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 PCDHA4Q9UN74 947 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 CORO7P57737 925 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 PCDHB6Q9Y5E3 794 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 UGGT2Q9NYU1 1516 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 MYL1P05976 194 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 KLC3Q6P597 504 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 ZBTB8OSQ8IWT0 167 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 LRRC47Q8N1G4 583 aaKnown RBP12.69□□□□□ -0.38
SYNPO-202ENST00000394243 TMCO5AQ8N6Q1 288 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 TEKT3Q9BXF9 490 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 TARSL2A2RTX5 802 aaKnown RBP12.69□□□□□ -0.38
SYNPO-202ENST00000394243 WDR64B1ANS9 1081 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 LPXNO60711 386 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 GLG1Q92896 1179 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 KLC2Q9H0B6 622 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 DDX47Q9H0S4 455 aaKnown RBP12.69□□□□□ -0.38
SYNPO-202ENST00000394243 SUN2Q9UH99 717 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 ARL2BPQ9Y2Y0 163 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 ADGRG1Q9Y653 693 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 MAP3K19Q56UN5 1328 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 PLB1Q6P1J6 1458 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 CHEK2O96017 543 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 ARL4CP56559 192 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 ZC3H12BQ5HYM0 836 aaKnown RBP12.69□□□□□ -0.38
SYNPO-202ENST00000394243 RNF217Q8TC41 542 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 DNAJC9Q8WXX5 260 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 SLC40A1Q9NP59 571 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 PICK1Q9NRD5 415 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 OLA1Q9NTK5 396 aaKnown RBP12.69□□□□□ -0.38
SYNPO-202ENST00000394243 GEMIN8Q9NWZ8 242 aaKnown RBP12.69□□□□□ -0.38
SYNPO-202ENST00000394243 LRRIQ4A6NIV6 560 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 SLC4A1P02730 911 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 ATP1A1P05023 1023 aaKnown RBP12.69□□□□□ -0.38
SYNPO-202ENST00000394243 ACBD5Q5T8D3 534 aaPredicted RBP12.69□□□□□ -0.38
SYNPO-202ENST00000394243 SEC16BQ96JE7 1060 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 SH3GL2Q99962 352 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 RNF26Q9BY78 433 aaPredicted RBP12.69□□□□□ -0.38
SYNPO-202ENST00000394243 ARHGAP26Q9UNA1 814 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 UBTFL6P0CB48 400 aaPredicted RBP12.69□□□□□ -0.38
SYNPO-202ENST00000394243 HIC1Q14526 733 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 MDH1BQ5I0G3 518 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 BTNL9Q6UXG8 535 aa12.69□□□□□ -0.38
SYNPO-202ENST00000394243 SEMA3EO15041 775 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 EFTUD2Q15029 972 aaKnown RBP eCLIP12.68□□□□□ -0.38
SYNPO-202ENST00000394243 ADCK1Q86TW2 530 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 RHOT2Q8IXI1 618 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 FAM96AQ9H5X1 160 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 ZBED1O96006 694 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 IL2RBP14784 551 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 HSPA9P38646 679 aaKnown RBP12.68□□□□□ -0.38
SYNPO-202ENST00000394243 CATSPER1Q8NEC5 780 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 ARL8AQ96BM9 186 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 SLC38A10Q9HBR0 1119 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 GTSE1Q9NYZ3 720 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 PHF20L1A8MW92 1017 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 H0Y626 953 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 H0YCG3 227 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 TJP3O95049 919 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 TRIM16O95361 564 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 A1BGP04217 495 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 SCP2P22307 547 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 ANGPTL8Q6UXH0 198 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 KCNF1Q9H3M0 494 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 OSBPL3Q9H4L5 887 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 RTCBQ9Y3I0 505 aaKnown RBP12.68□□□□□ -0.38
SYNPO-202ENST00000394243 INSRP06213 1382 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 HNRNPDLO14979 420 aaKnown RBP12.68□□□□□ -0.38
SYNPO-202ENST00000394243 PLCG1P19174 1290 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 NAF1Q96HR8 494 aaKnown RBP12.68□□□□□ -0.38
SYNPO-202ENST00000394243 HEMGNQ9BXL5 484 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 SNX25Q9H3E2 840 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 EMILIN3Q9NT22 766 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 KIF17Q9P2E2 1029 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 SOS2Q07890 1332 aaPredicted RBP12.68□□□□□ -0.38
SYNPO-202ENST00000394243 SERPINB2P05120 415 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 ENO1P06733 434 aaKnown RBP12.68□□□□□ -0.38
SYNPO-202ENST00000394243 AARSP49588 968 aaKnown RBP eCLIP12.68□□□□□ -0.38
SYNPO-202ENST00000394243 CAPRIN1Q14444 709 aaKnown RBP12.68□□□□□ -0.38
SYNPO-202ENST00000394243 DHX40Q8IX18 779 aaKnown RBP12.68□□□□□ -0.38
SYNPO-202ENST00000394243 TTC25Q96NG3 672 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 BPIFA3Q9BQP9 254 aa12.68□□□□□ -0.38
SYNPO-202ENST00000394243 TTC7AQ9ULT0 858 aaPredicted RBP12.68□□□□□ -0.38
SYNPO-202ENST00000394243 ESRRBO95718 433 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 MRPS35P82673 323 aaKnown RBP12.67□□□□□ -0.38
SYNPO-202ENST00000394243 KDSRQ06136 332 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 ARHGEF16Q5VV41 709 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 RESP18Q5W5W9 173 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 RINLQ6ZS11 566 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.67□□□□□ -0.38
SYNPO-202ENST00000394243 ZC3H15Q8WU90 426 aaKnown RBP12.67□□□□□ -0.38
SYNPO-202ENST00000394243 RBM17Q96I25 401 aaKnown RBP12.67□□□□□ -0.38
SYNPO-202ENST00000394243 ZWILCHQ9H900 591 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 GRID2IPA4D2P6 1211 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms