RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 APLP1P51693 650 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 UBASH3AP57075 661 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 ASIC1P78348 528 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 SP2Q02086 613 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 MORC3Q14149 939 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 ZNF792Q3KQV3 632 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 C17orf99Q6UX52 265 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 DYMQ7RTS9 669 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 LRRN4CLQ8ND94 238 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 PIGOQ8TEQ8 1089 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 LXNQ9BS40 222 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 DNAI1Q9UI46 699 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 PLA2G4BP0C869 781 aa13.79□□□□□ -0.2
CIITA-202ENST00000381835 ICAM3P32942 547 aa13.79□□□□□ -0.2
CIITA-202ENST00000381835 ETF1P62495 437 aaKnown RBP13.79□□□□□ -0.2
CIITA-202ENST00000381835 KRT76Q01546 638 aa13.79□□□□□ -0.2
CIITA-202ENST00000381835 GRB14Q14449 540 aa13.79□□□□□ -0.2
CIITA-202ENST00000381835 CYFIP1Q7L576 1253 aa13.79□□□□□ -0.2
CIITA-202ENST00000381835 FBXO16Q8IX29 292 aaPredicted RBP13.79□□□□□ -0.2
CIITA-202ENST00000381835 TRIML1Q8N9V2 468 aa13.79□□□□□ -0.2
CIITA-202ENST00000381835 C7orf25Q9BPX7 421 aa13.79□□□□□ -0.2
CIITA-202ENST00000381835 JPH1Q9HDC5 661 aaPredicted RBP13.79□□□□□ -0.2
CIITA-202ENST00000381835 WRAP73Q9P2S5 460 aaPredicted RBP13.79□□□□□ -0.2
CIITA-202ENST00000381835 ASB14A6NK59 587 aa13.79□□□□□ -0.2
CIITA-202ENST00000381835 RASSF10A6NK89 507 aa13.79□□□□□ -0.2
CIITA-202ENST00000381835 WDR64B1ANS9 1081 aa13.79□□□□□ -0.2
CIITA-202ENST00000381835 ZBTB39O15060 712 aa13.79□□□□□ -0.2
CIITA-202ENST00000381835 ARHGAP29Q52LW3 1261 aa13.79□□□□□ -0.2
CIITA-202ENST00000381835 ARMCX2Q7L311 632 aa13.79□□□□□ -0.2
CIITA-202ENST00000381835 SLC9A2Q9UBY0 812 aa13.79□□□□□ -0.2
CIITA-202ENST00000381835 TELO2Q9Y4R8 837 aa13.79□□□□□ -0.2
CIITA-202ENST00000381835 PHLPP2Q6ZVD8 1323 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 CA12O43570 354 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 P4HBP07237 508 aaKnown RBP13.78□□□□□ -0.2
CIITA-202ENST00000381835 MYL5Q02045 173 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 ZNF746Q6NUN9 644 aaPredicted RBP13.78□□□□□ -0.2
CIITA-202ENST00000381835 TRMT1LQ7Z2T5 733 aaKnown RBP13.78□□□□□ -0.2
CIITA-202ENST00000381835 SMYD4Q8IYR2 804 aaPredicted RBP13.78□□□□□ -0.2
CIITA-202ENST00000381835 DDX12PQ92771 950 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 HSD3B7Q9H2F3 369 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 BHMT2Q9H2M3 363 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 MYH9P35579 1960 aaKnown RBP13.78□□□□□ -0.2
CIITA-202ENST00000381835 NFASCO94856 1347 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 KLRC4O43908 158 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 UBA1P22314 1058 aaKnown RBP13.78□□□□□ -0.2
CIITA-202ENST00000381835 SFNP31947 248 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 JAK3P52333 1124 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 SLC12A3P55017 1021 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 RAD51AP2Q09MP3 1159 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 LY6KQ17RY6 165 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 GPBP1Q86WP2 473 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 NEK9Q8TD19 979 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 UBXN4Q92575 508 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 SENP7Q9BQF6 1050 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 LRRC27Q9C0I9 530 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 RMND1Q9NWS8 449 aa13.78□□□□□ -0.2
CIITA-202ENST00000381835 SLC15A5A6NIM6 579 aa13.77□□□□□ -0.21
CIITA-202ENST00000381835 IDEP14735 1019 aa13.77□□□□□ -0.21
CIITA-202ENST00000381835 QARSP47897 775 aaKnown RBP13.77□□□□□ -0.21
CIITA-202ENST00000381835 CLCN6P51797 869 aa13.77□□□□□ -0.21
CIITA-202ENST00000381835 MORC4Q8TE76 937 aa13.77□□□□□ -0.21
CIITA-202ENST00000381835 ST7Q9NRC1 585 aa13.77□□□□□ -0.21
CIITA-202ENST00000381835 BMP2KQ9NSY1 1161 aaPredicted RBP13.77□□□□□ -0.21
CIITA-202ENST00000381835 PCDHA10Q9Y5I2 948 aa13.77□□□□□ -0.21
CIITA-202ENST00000381835 LOC102724159A0A0B4J2E5 919 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 NPHP3-ACAD11A0A0J9YXS1 232 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 ARIH2O95376 493 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 EYA4O95677 639 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 TGFB3P10600 412 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 CYP11B2P19099 503 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 ACTR2P61160 394 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 CACNB1Q02641 598 aaPredicted RBP13.76□□□□□ -0.21
CIITA-202ENST00000381835 PWP2Q15269 919 aaKnown RBP13.76□□□□□ -0.21
CIITA-202ENST00000381835 UGCGQ16739 394 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 SYT2Q8N9I0 419 aaPredicted RBP13.76□□□□□ -0.21
CIITA-202ENST00000381835 MLKLQ8NB16 471 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 MNS1Q8NEH6 495 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 MAML3Q96JK9 1138 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 NACC1Q96RE7 527 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 ZSWIM4Q9H7M6 989 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 PDGFCQ9NRA1 345 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 EXOC1Q9NV70 894 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 ARGLU1Q9NWB6 273 aaPredicted RBP13.76□□□□□ -0.21
CIITA-202ENST00000381835 CENPFP49454 3210 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 CCDC66A2RUB6 948 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 URI1O94763 535 aaPredicted RBP13.76□□□□□ -0.21
CIITA-202ENST00000381835 ALDH1A1P00352 501 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 KRT18P05783 430 aaKnown RBP13.76□□□□□ -0.21
CIITA-202ENST00000381835 MUTP22033 750 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 HTRA3P83110 453 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 NEDD9Q14511 834 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 KCNB1Q14721 858 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 NPLOC4Q8TAT6 608 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 CCDC47Q96A33 483 aaKnown RBP13.76□□□□□ -0.21
CIITA-202ENST00000381835 GDAQ9Y2T3 454 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 LOXHD1Q8IVV2 1947 aa13.76□□□□□ -0.21
CIITA-202ENST00000381835 TNPO2O14787 897 aaKnown RBP13.75□□□□□ -0.21
CIITA-202ENST00000381835 ZSCAN12O43309 604 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 GGPS1O95749 300 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 ARSHQ5FYA8 562 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms