RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 CROCCP3Q8IVE0 287 aa12.69□□□□□ -0.38
NPHP4-202ENST00000378161 ORAI2Q96SN7 254 aa12.69□□□□□ -0.38
NPHP4-202ENST00000378161 RNF14Q9UBS8 474 aa12.69□□□□□ -0.38
NPHP4-202ENST00000378161 POLR2DO15514 142 aaKnown RBP12.68□□□□□ -0.38
NPHP4-202ENST00000378161 ITGA2BP08514 1039 aa12.68□□□□□ -0.38
NPHP4-202ENST00000378161 ETS2P15036 469 aa12.68□□□□□ -0.38
NPHP4-202ENST00000378161 DDX18Q9NVP1 670 aaKnown RBP12.68□□□□□ -0.38
NPHP4-202ENST00000378161 DBNLQ9UJU6 430 aaKnown RBP12.68□□□□□ -0.38
NPHP4-202ENST00000378161 TRAF3IP3Q9Y228 551 aa12.68□□□□□ -0.38
NPHP4-202ENST00000378161 ATP11BQ9Y2G3 1177 aa12.68□□□□□ -0.38
NPHP4-202ENST00000378161 ESRRBO95718 433 aa12.68□□□□□ -0.38
NPHP4-202ENST00000378161 CALML3P27482 149 aa12.68□□□□□ -0.38
NPHP4-202ENST00000378161 CYTH1Q15438 398 aa12.68□□□□□ -0.38
NPHP4-202ENST00000378161 NSUN7Q8NE18 718 aaKnown RBP12.68□□□□□ -0.38
NPHP4-202ENST00000378161 AGAP3Q96P47 875 aa12.68□□□□□ -0.38
NPHP4-202ENST00000378161 LRRC27Q9C0I9 530 aa12.68□□□□□ -0.38
NPHP4-202ENST00000378161 GOLPH3LQ9H4A5 285 aa12.68□□□□□ -0.38
NPHP4-202ENST00000378161 MAPK13O15264 365 aa12.68□□□□□ -0.38
NPHP4-202ENST00000378161 ITIH3Q06033 890 aa12.68□□□□□ -0.38
NPHP4-202ENST00000378161 PPIDQ08752 370 aaKnown RBP12.68□□□□□ -0.38
NPHP4-202ENST00000378161 AGBL2Q5U5Z8 902 aa12.68□□□□□ -0.38
NPHP4-202ENST00000378161 ZNF589Q86UQ0 364 aaPredicted RBP12.68□□□□□ -0.38
NPHP4-202ENST00000378161 TTC30AQ86WT1 665 aa12.68□□□□□ -0.38
NPHP4-202ENST00000378161 BBOF1Q8ND07 529 aa12.68□□□□□ -0.38
NPHP4-202ENST00000378161 SPATA4Q8NEY3 305 aa12.68□□□□□ -0.38
NPHP4-202ENST00000378161 TRIM31Q9BZY9 425 aa12.68□□□□□ -0.38
NPHP4-202ENST00000378161 GPC6Q9Y625 555 aaPredicted RBP12.68□□□□□ -0.38
NPHP4-202ENST00000378161 HTR3EA5X5Y0 456 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 STRNO43815 780 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 NAT2P11245 290 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 PDIA3P30101 505 aaKnown RBP12.67□□□□□ -0.38
NPHP4-202ENST00000378161 RAD9BQ6WBX8 426 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 IFIH1Q9BYX4 1025 aaKnown RBP12.67□□□□□ -0.38
NPHP4-202ENST00000378161 ZNF510Q9Y2H8 683 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 AP3B1O00203 1094 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 BIRC5O15392 142 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 ORC4O43929 436 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 ECE1P42892 770 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 SLC17A8Q8NDX2 589 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 PDZD8Q8NEN9 1154 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 DEPTORQ8TB45 409 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 CABP5Q9NP86 173 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 ROBO2Q9HCK4 1378 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 HSPA1AP0DMV8 641 aaKnown RBP12.67□□□□□ -0.38
NPHP4-202ENST00000378161 HSPA1BP0DMV9 641 aaKnown RBP12.67□□□□□ -0.38
NPHP4-202ENST00000378161 VAV1P15498 845 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 MAGEA1P43355 309 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 ESRRGP62508 458 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 KCNJ2P63252 427 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 ANO7Q6IWH7 933 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 ZNF594Q96JF6 807 aaPredicted RBP12.67□□□□□ -0.38
NPHP4-202ENST00000378161 CYTH2Q99418 400 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.67□□□□□ -0.38
NPHP4-202ENST00000378161 TLR7Q9NYK1 1049 aaKnown RBP12.67□□□□□ -0.38
NPHP4-202ENST00000378161 CTNNAL1Q9UBT7 734 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 HBS1LQ9Y450 684 aaKnown RBP12.67□□□□□ -0.38
NPHP4-202ENST00000378161 IVNS1ABPQ9Y6Y0 642 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 ARL1P40616 181 aaPredicted RBP12.67□□□□□ -0.38
NPHP4-202ENST00000378161 RNASELQ05823 741 aaKnown RBP12.67□□□□□ -0.38
NPHP4-202ENST00000378161 ZNF268Q14587 947 aaPredicted RBP12.67□□□□□ -0.38
NPHP4-202ENST00000378161 MAGEB6Q8N7X4 407 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 DTX3LQ8TDB6 740 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 AENQ8WTP8 325 aaKnown RBP12.67□□□□□ -0.38
NPHP4-202ENST00000378161 CENPOQ9BU64 300 aa12.67□□□□□ -0.38
NPHP4-202ENST00000378161 ESYT3A0FGR9 886 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 SYCE1LA8MT33 242 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 EIF2S1P05198 315 aaKnown RBP12.66□□□□□ -0.38
NPHP4-202ENST00000378161 POLR2EP19388 210 aaKnown RBP12.66□□□□□ -0.38
NPHP4-202ENST00000378161 PDCD4Q53EL6 469 aaKnown RBP12.66□□□□□ -0.38
NPHP4-202ENST00000378161 NELFBQ8WX92 580 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 CRNKL1Q9BZJ0 848 aaKnown RBP12.66□□□□□ -0.38
NPHP4-202ENST00000378161 ANKRD2Q9GZV1 360 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 TAB2Q9NYJ8 693 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 BAG3O95817 575 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 CXCR5P32302 372 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 MRPS9P82933 396 aaKnown RBP12.66□□□□□ -0.38
NPHP4-202ENST00000378161 PROSER3Q2NL68 480 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 B3GNT6Q6ZMB0 384 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 MMGT1Q8N4V1 131 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 TRIML2Q8N7C3 387 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 NDE1Q9NXR1 346 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 PCDHA5Q9Y5H7 936 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 ATP10DQ9P241 1426 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 IRS4O14654 1257 aaPredicted RBP12.66□□□□□ -0.38
NPHP4-202ENST00000378161 DCTN3O75935 186 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 CUL1Q13616 776 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 DDB1Q16531 1140 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 CCDC25Q86WR0 208 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 PHKBQ93100 1093 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 TUBGCP5Q96RT8 1024 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 TUBB6Q9BUF5 446 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 FADS3Q9Y5Q0 445 aa12.66□□□□□ -0.38
NPHP4-202ENST00000378161 CCNFP41002 786 aa12.65□□□□□ -0.38
NPHP4-202ENST00000378161 CDR2Q01850 454 aa12.65□□□□□ -0.38
NPHP4-202ENST00000378161 FMR1NBQ8N0W7 255 aaPredicted RBP12.65□□□□□ -0.38
NPHP4-202ENST00000378161 SNX29Q8TEQ0 813 aa12.65□□□□□ -0.38
NPHP4-202ENST00000378161 CCDC138Q96M89 665 aa12.65□□□□□ -0.38
NPHP4-202ENST00000378161 SYT15Q9BQS2 421 aa12.65□□□□□ -0.38
NPHP4-202ENST00000378161 TRIM17Q9Y577 477 aa12.65□□□□□ -0.38
NPHP4-202ENST00000378161 KRT5P13647 590 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms