RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 TUBE1Q9UJT0 475 aa15.05■□□□□ -0
VPS28-202ENST00000377348 PCDHB6Q9Y5E3 794 aa15.05■□□□□ -0
VPS28-202ENST00000377348 ZBTB42B2RXF5 422 aa15.04■□□□□ -0
VPS28-202ENST00000377348 HBP1O60381 514 aa15.04■□□□□ -0
VPS28-202ENST00000377348 IQCF3P0C7M6 154 aa15.04■□□□□ -0
VPS28-202ENST00000377348 SELPP16109 830 aa15.04■□□□□ -0
VPS28-202ENST00000377348 THPOP40225 353 aa15.04■□□□□ -0
VPS28-202ENST00000377348 TRAPPC10P48553 1259 aa15.04■□□□□ -0
VPS28-202ENST00000377348 PRKCEQ02156 737 aa15.04■□□□□ -0
VPS28-202ENST00000377348 RBL2Q08999 1139 aa15.04■□□□□ -0
VPS28-202ENST00000377348 HABP4Q5JVS0 413 aaKnown RBP15.04■□□□□ -0
VPS28-202ENST00000377348 TRAF7Q6Q0C0 670 aa15.04■□□□□ -0
VPS28-202ENST00000377348 LRRC8DQ7L1W4 858 aa15.04■□□□□ -0
VPS28-202ENST00000377348 DEFB128Q7Z7B8 93 aa15.04■□□□□ -0
VPS28-202ENST00000377348 FERMT3Q86UX7 667 aa15.04■□□□□ -0
VPS28-202ENST00000377348 SPRYD3Q8NCJ5 442 aa15.04■□□□□ -0
VPS28-202ENST00000377348 RDM1Q8NG50 284 aa15.04■□□□□ -0
VPS28-202ENST00000377348 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.04■□□□□ -04e-7■■■■□ 21.8
VPS28-202ENST00000377348 TTC12Q9H892 705 aaPredicted RBP15.04■□□□□ -0
VPS28-202ENST00000377348 IL23AQ9NPF7 189 aa15.04■□□□□ -0
VPS28-202ENST00000377348 PCDHA12Q9UN75 941 aa15.04■□□□□ -0
VPS28-202ENST00000377348 MBLAC1A4D2B0 266 aaPredicted RBP15.03■□□□□ -0
VPS28-202ENST00000377348 TMEM150BA6NC51 233 aa15.03■□□□□ -0
VPS28-202ENST00000377348 RRN3P2A6NIE6 340 aa15.03■□□□□ -0
VPS28-202ENST00000377348 OATP04181 439 aa15.03■□□□□ -0
VPS28-202ENST00000377348 CTSHP09668 335 aa15.03■□□□□ -0
VPS28-202ENST00000377348 OR52Z1P0C646 297 aa15.03■□□□□ -0
VPS28-202ENST00000377348 SYT1P21579 422 aa15.03■□□□□ -0
VPS28-202ENST00000377348 MBTPS1Q14703 1052 aa15.03■□□□□ -0
VPS28-202ENST00000377348 GPNMBQ14956 572 aa15.03■□□□□ -0
VPS28-202ENST00000377348 MTHFD1LQ6UB35 978 aa15.03■□□□□ -0
VPS28-202ENST00000377348 C4orf32Q8N8J7 132 aa15.03■□□□□ -0
VPS28-202ENST00000377348 BBXQ8WY36 941 aaPredicted RBP15.03■□□□□ -0
VPS28-202ENST00000377348 TNPO1Q92973 898 aaKnown RBP15.03■□□□□ -0
VPS28-202ENST00000377348 SH2D3AQ9BRG2 576 aa15.03■□□□□ -0
VPS28-202ENST00000377348 RGL1Q9NZL6 768 aa15.03■□□□□ -0
VPS28-202ENST00000377348 WRAP73Q9P2S5 460 aaPredicted RBP15.03■□□□□ -0
VPS28-202ENST00000377348 SCN5AQ14524 2016 aa15.02■□□□□ -0
VPS28-202ENST00000377348 POTEMA6NI47 508 aa15.02■□□□□ -0
VPS28-202ENST00000377348 STBD1O95210 358 aa15.02■□□□□ -0
VPS28-202ENST00000377348 PDCP20941 246 aa15.02■□□□□ -0
VPS28-202ENST00000377348 ORC2Q13416 577 aaPredicted RBP15.02■□□□□ -0
VPS28-202ENST00000377348 EPHA7Q15375 998 aa15.02■□□□□ -0
VPS28-202ENST00000377348 ZNF484Q5JVG2 852 aa15.02■□□□□ -0
VPS28-202ENST00000377348 TMEM240Q5SV17 173 aa15.02■□□□□ -0
VPS28-202ENST00000377348 ZNF365Q70YC5 407 aa15.02■□□□□ -0
VPS28-202ENST00000377348 DNAJB3Q8WWF6 145 aa15.02■□□□□ -0
VPS28-202ENST00000377348 DYDC2Q96IM9 177 aa15.02■□□□□ -0
VPS28-202ENST00000377348 OSBPL7Q9BZF2 842 aa15.02■□□□□ -0
VPS28-202ENST00000377348 FAM49AQ9H0Q0 323 aaPredicted RBP15.02■□□□□ -0
VPS28-202ENST00000377348 SZT2Q5T011 3432 aa15.02□□□□□ -0.01
VPS28-202ENST00000377348 KAT6AQ92794 2004 aa15.02□□□□□ -0.01
VPS28-202ENST00000377348 TANC1Q9C0D5 1861 aa15.01□□□□□ -0.01
VPS28-202ENST00000377348 RSPH10B2B2RC85 870 aa15.01□□□□□ -0.01
VPS28-202ENST00000377348 NBNO60934 754 aa15.01□□□□□ -0.01
VPS28-202ENST00000377348 P4HBP07237 508 aaKnown RBP15.01□□□□□ -0.01
VPS28-202ENST00000377348 HSP90AA1P07900 732 aaKnown RBP15.01□□□□□ -0.01
VPS28-202ENST00000377348 RSPH10BP0C881 870 aa15.01□□□□□ -0.01
VPS28-202ENST00000377348 KLRC1P26715 233 aa15.01□□□□□ -0.01
VPS28-202ENST00000377348 TECP42680 631 aa15.01□□□□□ -0.01
VPS28-202ENST00000377348 PSMC5P62195 406 aa15.01□□□□□ -0.01
VPS28-202ENST00000377348 CYP4A11Q02928 519 aa15.01□□□□□ -0.01
VPS28-202ENST00000377348 PTGDRQ13258 359 aa15.01□□□□□ -0.01
VPS28-202ENST00000377348 CTTNQ14247 550 aaKnown RBP15.01□□□□□ -0.01
VPS28-202ENST00000377348 RILPL1Q5EBL4 403 aa15.01□□□□□ -0.01
VPS28-202ENST00000377348 TAF2Q6P1X5 1199 aa15.01□□□□□ -0.01
VPS28-202ENST00000377348 OTOP2Q7RTS6 562 aa15.01□□□□□ -0.01
VPS28-202ENST00000377348 FAM167AQ96KS9 214 aa15.01□□□□□ -0.01
VPS28-202ENST00000377348 RNPC3Q96LT9 517 aaKnown RBP15.01□□□□□ -0.01
VPS28-202ENST00000377348 EIF2AK1Q9BQI3 630 aaKnown RBP15.01□□□□□ -0.01
VPS28-202ENST00000377348 LXNQ9BS40 222 aa15.01□□□□□ -0.01
VPS28-202ENST00000377348 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.01□□□□□ -0.01
VPS28-202ENST00000377348 NRBP2Q9NSY0 501 aa15.01□□□□□ -0.01
VPS28-202ENST00000377348 SEPT9Q9UHD8 586 aaPredicted RBP15.01□□□□□ -0.01
VPS28-202ENST00000377348 MYH9P35579 1960 aaKnown RBP15.01□□□□□ -0.01
VPS28-202ENST00000377348 COL1A2P08123 1366 aa15□□□□□ -0.01
VPS28-202ENST00000377348 WDR81Q562E7 1941 aa15□□□□□ -0.01
VPS28-202ENST00000377348 A0A1W2PPC1 479 aa15□□□□□ -0.01
VPS28-202ENST00000377348 DDX11L8A8MPP1 907 aa15□□□□□ -0.01
VPS28-202ENST00000377348 C22orf31O95567 290 aa15□□□□□ -0.01
VPS28-202ENST00000377348 FGBP02675 491 aa15□□□□□ -0.01
VPS28-202ENST00000377348 RFC2P35250 354 aa15□□□□□ -0.01
VPS28-202ENST00000377348 QARSP47897 775 aaKnown RBP15□□□□□ -0.01
VPS28-202ENST00000377348 TMEM62Q0P6H9 643 aa15□□□□□ -0.01
VPS28-202ENST00000377348 RESTQ13127 1097 aa15□□□□□ -0.01
VPS28-202ENST00000377348 TCTN1Q2MV58 587 aa15□□□□□ -0.01
VPS28-202ENST00000377348 MTERF2Q49AM1 385 aa15□□□□□ -0.01
VPS28-202ENST00000377348 XKR3Q5GH77 459 aa15□□□□□ -0.01
VPS28-202ENST00000377348 PLA2G4FQ68DD2 849 aa15□□□□□ -0.01
VPS28-202ENST00000377348 PSRC1Q6PGN9 363 aaPredicted RBP15□□□□□ -0.01
VPS28-202ENST00000377348 TPH2Q8IWU9 490 aa15□□□□□ -0.01
VPS28-202ENST00000377348 RPUSD2Q8IZ73 545 aaKnown RBP15□□□□□ -0.01
VPS28-202ENST00000377348 FTOQ9C0B1 505 aaKnown RBP eCLIP15□□□□□ -0.011e-6■■□□□ 11.8
VPS28-202ENST00000377348 MTMR6Q9Y217 621 aa15□□□□□ -0.01
VPS28-202ENST00000377348 PCDHA2Q9Y5H9 948 aa15□□□□□ -0.01
VPS28-202ENST00000377348 TET1Q8NFU7 2136 aa14.99□□□□□ -0.01
VPS28-202ENST00000377348 SMIM35A0A1B0GVV1 85 aa14.99□□□□□ -0.01
VPS28-202ENST00000377348 SOX1O00570 391 aaPredicted RBP14.99□□□□□ -0.01
VPS28-202ENST00000377348 ZBTB39O15060 712 aa14.99□□□□□ -0.01
VPS28-202ENST00000377348 STX6O43752 255 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms