RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 AJUBAQ96IF1 538 aa3.43□□□□□ -1.86
VPS13A-206ENST00000376646 C8orf37Q96NL8 207 aa3.43□□□□□ -1.86
VPS13A-206ENST00000376646 KATNBL1Q9H079 304 aa3.43□□□□□ -1.86
VPS13A-206ENST00000376646 KIAA1683Q9H0B3 1180 aa3.43□□□□□ -1.86
VPS13A-206ENST00000376646 KLC2Q9H0B6 622 aa3.43□□□□□ -1.86
VPS13A-206ENST00000376646 BTBD7Q9P203 1132 aa3.43□□□□□ -1.86
VPS13A-206ENST00000376646 MYRFQ9Y2G1 1151 aa3.43□□□□□ -1.86
VPS13A-206ENST00000376646 RASSF10A6NK89 507 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 RNF151Q2KHN1 245 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 SLFN13Q68D06 897 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 EP400NLQ6ZTU2 488 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 BRAPQ7Z569 592 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 NLGN4XQ8N0W4 816 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 LILRB2Q8N423 598 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 TTC9BQ8N6N2 239 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 LMF1Q96S06 567 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 C1QTNF3Q9BXJ4 246 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 AMNQ9BXJ7 453 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 DEF6Q9H4E7 631 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 PATE3B3GLJ2 98 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 MPIG6BO95866 241 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 PTGS1P23219 599 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 AOAHP28039 575 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 KCNQ1P51787 676 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 TBR1Q16650 682 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 WDR72Q3MJ13 1102 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 TCTN3Q6NUS6 607 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 LARP4Q71RC2 724 aaKnown RBP eCLIP3.42□□□□□ -1.86
VPS13A-206ENST00000376646 NOSTRINQ8IVI9 506 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 GSTCDQ8NEC7 633 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 Q8TCH9 128 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 DPYSL5Q9BPU6 564 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 KANSL2Q9H9L4 492 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 INCENPQ9NQS7 918 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 PTCH2Q9Y6C5 1203 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 SLC4A7Q9Y6M7 1214 aa3.42□□□□□ -1.86
VPS13A-206ENST00000376646 CHGBP05060 677 aa3.41□□□□□ -1.86
VPS13A-206ENST00000376646 KCNA6P17658 529 aa3.41□□□□□ -1.86
VPS13A-206ENST00000376646 POLD1P28340 1107 aa3.41□□□□□ -1.86
VPS13A-206ENST00000376646 ZXDAP98168 799 aa3.41□□□□□ -1.86
VPS13A-206ENST00000376646 TOP3AQ13472 1001 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-206ENST00000376646 USP10Q14694 798 aaKnown RBP3.41□□□□□ -1.86
VPS13A-206ENST00000376646 FAM47CQ5HY64 1035 aa3.41□□□□□ -1.86
VPS13A-206ENST00000376646 TAX1BP1Q86VP1 789 aa3.41□□□□□ -1.86
VPS13A-206ENST00000376646 IGSF22Q8N9C0 903 aa3.41□□□□□ -1.86
VPS13A-206ENST00000376646 NEIL1Q96FI4 390 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-206ENST00000376646 SFMBT1Q9UHJ3 866 aa3.41□□□□□ -1.86
VPS13A-206ENST00000376646 ZNF623O75123 536 aa3.41□□□□□ -1.86
VPS13A-206ENST00000376646 RAPGEF3O95398 923 aa3.41□□□□□ -1.86
VPS13A-206ENST00000376646 LACTBP83111 547 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-206ENST00000376646 CD83Q01151 205 aa3.41□□□□□ -1.86
VPS13A-206ENST00000376646 TMEM132BQ14DG7 1078 aa3.41□□□□□ -1.86
VPS13A-206ENST00000376646 R3HDM1Q15032 1099 aaKnown RBP3.41□□□□□ -1.86
VPS13A-206ENST00000376646 SPDYAQ5MJ70 313 aa3.41□□□□□ -1.86
VPS13A-206ENST00000376646 OVCH1Q7RTY7 1134 aa3.41□□□□□ -1.86
VPS13A-206ENST00000376646 ASB15Q8WXK1 588 aa3.41□□□□□ -1.86
VPS13A-206ENST00000376646 ERCC4Q92889 916 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-206ENST00000376646 MAGEB10Q96LZ2 347 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-206ENST00000376646 SCAND2PQ9GZW5 306 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-206ENST00000376646 GALNT8Q9NY28 637 aa3.41□□□□□ -1.86
VPS13A-206ENST00000376646 TCRBV16S1A1N1A0A5B0 115 aa3.4□□□□□ -1.86
VPS13A-206ENST00000376646 PRAMEF22A3QJZ6 481 aa3.4□□□□□ -1.86
VPS13A-206ENST00000376646 MATN2O00339 956 aa3.4□□□□□ -1.86
VPS13A-206ENST00000376646 CLASP2O75122 1294 aaKnown RBP3.4□□□□□ -1.86
VPS13A-206ENST00000376646 KRT37O76014 449 aa3.4□□□□□ -1.86
VPS13A-206ENST00000376646 FSHBP01225 129 aa3.4□□□□□ -1.86
VPS13A-206ENST00000376646 BMS1Q14692 1282 aaKnown RBP3.4□□□□□ -1.86
VPS13A-206ENST00000376646 IFNL2Q8IZJ0 200 aa3.4□□□□□ -1.86
VPS13A-206ENST00000376646 Q8N1X5 172 aa3.4□□□□□ -1.86
VPS13A-206ENST00000376646 GIMAP8Q8ND71 665 aaPredicted RBP3.4□□□□□ -1.86
VPS13A-206ENST00000376646 CLUHP3Q96NS8 147 aa3.4□□□□□ -1.86
VPS13A-206ENST00000376646 CARD11Q9BXL7 1154 aa3.4□□□□□ -1.86
VPS13A-206ENST00000376646 TRIM39Q9HCM9 518 aa3.4□□□□□ -1.86
VPS13A-206ENST00000376646 MAGEL2Q9UJ55 1249 aa3.4□□□□□ -1.86
VPS13A-206ENST00000376646 TSC22D4Q9Y3Q8 395 aa3.4□□□□□ -1.86
VPS13A-206ENST00000376646 C1QTNF3-AMACRE9PGA6 284 aa3.4□□□□□ -1.87
VPS13A-206ENST00000376646 GSTA4O15217 222 aa3.4□□□□□ -1.87
VPS13A-206ENST00000376646 AKAP8O43823 692 aaKnown RBP3.4□□□□□ -1.87
VPS13A-206ENST00000376646 AMHP03971 560 aa3.4□□□□□ -1.87
VPS13A-206ENST00000376646 HMGCRP04035 888 aa3.4□□□□□ -1.87
VPS13A-206ENST00000376646 GJA4P35212 333 aa3.4□□□□□ -1.87
VPS13A-206ENST00000376646 STAT5BP51692 787 aa3.4□□□□□ -1.87
VPS13A-206ENST00000376646 LONRF2Q1L5Z9 754 aa3.4□□□□□ -1.87
VPS13A-206ENST00000376646 OTOP2Q7RTS6 562 aa3.4□□□□□ -1.87
VPS13A-206ENST00000376646 REXO1L1PQ8IX06 675 aa3.4□□□□□ -1.87
VPS13A-206ENST00000376646 FUKQ8N0W3 1084 aa3.4□□□□□ -1.87
VPS13A-206ENST00000376646 GBP4Q96PP9 640 aa3.4□□□□□ -1.87
VPS13A-206ENST00000376646 CELF4Q9BZC1 486 aaKnown RBP3.4□□□□□ -1.87
VPS13A-206ENST00000376646 ZDHHC5Q9C0B5 715 aa3.4□□□□□ -1.87
VPS13A-206ENST00000376646 ZFR2Q9UPR6 939 aaKnown RBP3.4□□□□□ -1.87
VPS13A-206ENST00000376646 C6P13671 934 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 ZNF460Q14592 562 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 ACAP1Q15027 740 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 TMEM177Q53S58 311 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 C2orf27AQ580R0 203 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 TRIM61Q5EBN2 209 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 CATSPEREQ5SY80 951 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 KANK2Q63ZY3 851 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 FILIP1Q7Z7B0 1213 aa3.39□□□□□ -1.87
VPS13A-206ENST00000376646 JMYQ8N9B5 988 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms