RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 ANGPT1Q15389 498 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 TMEM206Q9H813 350 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 FANCLQ9NW38 375 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 KCNJ14Q9UNX9 436 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 MXD4Q14582 209 aaPredicted RBP12.44□□□□□ -0.42
VPS13A-205ENST00000376636 SYBUQ9NX95 663 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 WDR17Q8IZU2 1322 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 SGSM2O43147 1006 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 KRT27Q7Z3Y8 459 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 TNIP2Q8NFZ5 429 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 CSADQ9Y600 493 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 GJA3Q9Y6H8 435 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 DIAPH2O60879 1101 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 CENPPQ6IPU0 288 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 BTNL9Q6UXG8 535 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 ULK4Q96C45 1275 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 XAGE2Q96GT9 111 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 AGBL1Q96MI9 1066 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 ENC1O14682 589 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 NLRP4Q96MN2 994 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 NRBP2Q9NSY0 501 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 CTTNBP2Q8WZ74 1663 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 ARHGEF11O15085 1522 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 SPATA5Q8NB90 893 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 OTULINQ96BN8 352 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 LRRC4Q9HBW1 653 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 hCG_2014768A0A024R1R8 64 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 SERPING1P05155 500 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 MKRN3Q13064 507 aaKnown RBP12.44□□□□□ -0.42
VPS13A-205ENST00000376636 RNF219Q5W0B1 726 aaPredicted RBP12.44□□□□□ -0.42
VPS13A-205ENST00000376636 PARP9Q8IXQ6 854 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 KIRREL3Q8IZU9 778 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 ABCF3Q9NUQ8 709 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 ADGRL1O94910 1474 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 CCDC188H7C350 402 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 EYA2O00167 538 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 UBE3AQ05086 875 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 CYLC2Q14093 348 aaPredicted RBP12.43□□□□□ -0.42
VPS13A-205ENST00000376636 FAM26FQ5R3K3 315 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 CEP95Q96GE4 821 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 CNGB3Q9NQW8 809 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 CYP26B1Q9NR63 512 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 USE1Q9NZ43 259 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 PCDHGB4Q9UN71 923 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 TBC1D9BQ66K14 1250 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 SLC7A3Q8WY07 619 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 SUGCTQ9HAC7 445 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.43□□□□□ -0.42
VPS13A-205ENST00000376636 HPCAL4Q9UM19 191 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 EIF2S1P05198 315 aaKnown RBP12.43□□□□□ -0.42
VPS13A-205ENST00000376636 NSUN2Q08J23 767 aaKnown RBP eCLIP12.43□□□□□ -0.42
VPS13A-205ENST00000376636 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.43□□□□□ -0.42
VPS13A-205ENST00000376636 LPIN2Q92539 896 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 NDEL1Q9GZM8 345 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 BATF3Q9NR55 127 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 ZBTB40Q9NUA8 1239 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 TRADDQ15628 312 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 EXT2Q93063 718 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 FAM149B1Q96BN6 582 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 SLC39A2Q9NP94 309 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 MAGED2Q9UNF1 606 aaPredicted RBP12.43□□□□□ -0.42
VPS13A-205ENST00000376636 NOVA2Q9UNW9 492 aaKnown RBP12.43□□□□□ -0.42
VPS13A-205ENST00000376636 MAGI1Q96QZ7 1491 aaPredicted RBP12.43□□□□□ -0.42
VPS13A-205ENST00000376636 FOXD4Q12950 439 aaPredicted RBP12.43□□□□□ -0.42
VPS13A-205ENST00000376636 ALCAMQ13740 583 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 RHOT2Q8IXI1 618 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 TTC17Q96AE7 1141 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 OLFML3Q9NRN5 406 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 UBE4BO95155 1302 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 RIMS2Q9UQ26 1411 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 HOMEZQ8IX15 550 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 GRAMD1AQ96CP6 724 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 GUCA1CO95843 209 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 IL2RBP14784 551 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 SURF1Q15526 300 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 GJA10Q969M2 543 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 GOLPH3LQ9H4A5 285 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 LRRN2O75325 713 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 DDAH1O94760 285 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 NACC1Q96RE7 527 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 TGS1Q96RS0 853 aaKnown RBP12.43□□□□□ -0.42
VPS13A-205ENST00000376636 SOX6P35712 828 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 CYTH1Q15438 398 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 PPP4R3CPQ6ZMV5 832 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 ANKS3Q6ZW76 656 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 ZNF713Q8N859 430 aaPredicted RBP12.43□□□□□ -0.42
VPS13A-205ENST00000376636 DCAF5Q96JK2 942 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 TRIM54Q9BYV2 358 aa12.43□□□□□ -0.42
VPS13A-205ENST00000376636 TRAPPC10P48553 1259 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 LBRQ14739 615 aaKnown RBP12.42□□□□□ -0.42
VPS13A-205ENST00000376636 MAN2A1Q16706 1144 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 SYMPKQ92797 1274 aaKnown RBP12.42□□□□□ -0.42
VPS13A-205ENST00000376636 TM6SF1Q9BZW5 370 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 MBD2Q9UBB5 411 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 SEPT9Q9UHD8 586 aaPredicted RBP12.42□□□□□ -0.42
VPS13A-205ENST00000376636 HIC1Q14526 733 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 CDC37Q16543 378 aaPredicted RBP12.42□□□□□ -0.42
VPS13A-205ENST00000376636 FGD2Q7Z6J4 655 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 TRIM69Q86WT6 500 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 RAB42Q8N4Z0 105 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms