RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 FAM114A1Q8IWE2 563 aa17.23■□□□□ 0.35
CCDC40-202ENST00000374876 DUSP9Q99956 384 aaKnown RBP17.23■□□□□ 0.35
CCDC40-202ENST00000374876 FLRT1Q9NZU1 646 aa17.23■□□□□ 0.35
CCDC40-202ENST00000374876 MRFAP1Q9Y605 127 aa17.23■□□□□ 0.35
CCDC40-202ENST00000374876 GRK4P32298 578 aa17.23■□□□□ 0.35
CCDC40-202ENST00000374876 DNM2P50570 870 aa17.23■□□□□ 0.35
CCDC40-202ENST00000374876 BAATQ14032 418 aaPredicted RBP17.23■□□□□ 0.35
CCDC40-202ENST00000374876 SLC9C1Q4G0N8 1177 aa17.23■□□□□ 0.35
CCDC40-202ENST00000374876 KRT79Q5XKE5 535 aa17.23■□□□□ 0.35
CCDC40-202ENST00000374876 PPP4R3AQ6IN85 833 aa17.23■□□□□ 0.35
CCDC40-202ENST00000374876 TNS4Q8IZW8 715 aa17.23■□□□□ 0.35
CCDC40-202ENST00000374876 TRIB2Q92519 343 aa17.23■□□□□ 0.35
CCDC40-202ENST00000374876 LARP4BQ92615 738 aaKnown RBP17.23■□□□□ 0.35
CCDC40-202ENST00000374876 TUBGCP2Q9BSJ2 902 aa17.23■□□□□ 0.35
CCDC40-202ENST00000374876 IRX2Q9BZI1 471 aaPredicted RBP17.23■□□□□ 0.35
CCDC40-202ENST00000374876 PSTPIP2Q9H939 334 aa17.23■□□□□ 0.35
CCDC40-202ENST00000374876 PNMA2Q9UL42 364 aa17.23■□□□□ 0.35
CCDC40-202ENST00000374876 ABCB11O95342 1321 aa17.22■□□□□ 0.35
CCDC40-202ENST00000374876 CLK2P49760 499 aaKnown RBP17.22■□□□□ 0.35
CCDC40-202ENST00000374876 PPP2R3AQ06190 1150 aa17.22■□□□□ 0.35
CCDC40-202ENST00000374876 TRIM32Q13049 653 aa17.22■□□□□ 0.35
CCDC40-202ENST00000374876 ANKRD40Q6AI12 368 aa17.22■□□□□ 0.35
CCDC40-202ENST00000374876 ZNF507Q8TCN5 953 aa17.22■□□□□ 0.35
CCDC40-202ENST00000374876 SNX29Q8TEQ0 813 aa17.22■□□□□ 0.35
CCDC40-202ENST00000374876 PNMA5Q96PV4 448 aa17.22■□□□□ 0.35
CCDC40-202ENST00000374876 APBA2Q99767 749 aa17.22■□□□□ 0.35
CCDC40-202ENST00000374876 CYP39A1Q9NYL5 469 aa17.22■□□□□ 0.35
CCDC40-202ENST00000374876 DDX25Q9UHL0 483 aaKnown RBP17.22■□□□□ 0.35
CCDC40-202ENST00000374876 LUC7L2Q9Y383 392 aaKnown RBP17.22■□□□□ 0.35
CCDC40-202ENST00000374876 MRPL11Q9Y3B7 192 aaKnown RBP17.22■□□□□ 0.35
CCDC40-202ENST00000374876 TTC26A0AVF1 554 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 POTEMA6NI47 508 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 B4DLN1 442 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 OPLAHO14841 1288 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 EDIL3O43854 480 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 MARCH6O60337 910 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 XRCC5P13010 732 aaKnown RBP17.21■□□□□ 0.35
CCDC40-202ENST00000374876 H2AFXP16104 143 aaPredicted RBP17.21■□□□□ 0.35
CCDC40-202ENST00000374876 MCM6Q14566 821 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 TSR1Q2NL82 804 aaKnown RBP17.21■□□□□ 0.35
CCDC40-202ENST00000374876 ZNF792Q3KQV3 632 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 COBLL1Q53SF7 1204 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 ACRBPQ8NEB7 543 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 OR8K1Q8NGG5 319 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 CNOT6LQ96LI5 555 aaKnown RBP17.21■□□□□ 0.35
CCDC40-202ENST00000374876 BLOC1S4Q9NUP1 217 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 DNAJC25-GNG10A0A024R161 153 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 A0A0U1RQJ8 604 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 HOXC6P09630 235 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 SLC30A10Q6XR72 485 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 RNF207Q6ZRF8 634 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.21■□□□□ 0.35
CCDC40-202ENST00000374876 SMAP1Q8IYB5 467 aaPredicted RBP17.21■□□□□ 0.35
CCDC40-202ENST00000374876 PXYLP1Q8TE99 480 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 ATRIPQ8WXE1 791 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 LRRC27Q9C0I9 530 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 SLC39A2Q9NP94 309 aa17.21■□□□□ 0.35
CCDC40-202ENST00000374876 PVALEFA0A1B0GWK0 134 aa17.2■□□□□ 0.34
CCDC40-202ENST00000374876 MYMKA6NI61 221 aa17.2■□□□□ 0.34
CCDC40-202ENST00000374876 POTEB2H3BUK9 544 aa17.2■□□□□ 0.34
CCDC40-202ENST00000374876 CFBP00751 764 aa17.2■□□□□ 0.34
CCDC40-202ENST00000374876 GCFC2P16383 781 aaKnown RBP17.2■□□□□ 0.34
CCDC40-202ENST00000374876 MTIF2P46199 727 aaKnown RBP17.2■□□□□ 0.34
CCDC40-202ENST00000374876 RPS6P62753 249 aaKnown RBP17.2■□□□□ 0.34
CCDC40-202ENST00000374876 ZNF569Q5MCW4 686 aa17.2■□□□□ 0.34
CCDC40-202ENST00000374876 UNC13DQ70J99 1090 aa17.2■□□□□ 0.34
CCDC40-202ENST00000374876 KIAA0895Q8NCT3 520 aa17.2■□□□□ 0.34
CCDC40-202ENST00000374876 SLAIN1Q8ND83 568 aa17.2■□□□□ 0.34
CCDC40-202ENST00000374876 RAD54LQ92698 747 aa17.2■□□□□ 0.34
CCDC40-202ENST00000374876 HPS3Q969F9 1004 aa17.2■□□□□ 0.34
CCDC40-202ENST00000374876 EEF2KMTQ96G04 330 aa17.2■□□□□ 0.34
CCDC40-202ENST00000374876 MAML3Q96JK9 1138 aa17.2■□□□□ 0.34
CCDC40-202ENST00000374876 GLT8D2Q9H1C3 349 aa17.2■□□□□ 0.34
CCDC40-202ENST00000374876 ARGLU1Q9NWB6 273 aaPredicted RBP17.2■□□□□ 0.34
CCDC40-202ENST00000374876 SLC5A4Q9NY91 659 aa17.2■□□□□ 0.34
CCDC40-202ENST00000374876 CAPN11Q9UMQ6 739 aa17.2■□□□□ 0.34
CCDC40-202ENST00000374876 CYP2C19P33261 490 aa17.2■□□□□ 0.34
CCDC40-202ENST00000374876 DYMQ7RTS9 669 aa17.2■□□□□ 0.34
CCDC40-202ENST00000374876 DNAJC7Q99615 494 aa17.2■□□□□ 0.34
CCDC40-202ENST00000374876 NAP1L4Q99733 375 aaKnown RBP17.2■□□□□ 0.34
CCDC40-202ENST00000374876 BRCA2P51587 3418 aa17.19■□□□□ 0.34
CCDC40-202ENST00000374876 SOWAHBA6NEL2 793 aa17.19■□□□□ 0.34
CCDC40-202ENST00000374876 TBC1D8BQ0IIM8 1120 aa17.19■□□□□ 0.34
CCDC40-202ENST00000374876 FAM133AQ8N9E0 248 aa17.19■□□□□ 0.34
CCDC40-202ENST00000374876 FGD4Q96M96 766 aa17.19■□□□□ 0.34
CCDC40-202ENST00000374876 NOC4LQ9BVI4 516 aaKnown RBP17.19■□□□□ 0.34
CCDC40-202ENST00000374876 NUP58Q9BVL2 599 aa17.19■□□□□ 0.34
CCDC40-202ENST00000374876 PFASO15067 1338 aa17.19■□□□□ 0.34
CCDC40-202ENST00000374876 INHAP05111 366 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 TRIM21P19474 475 aaKnown RBP17.18■□□□□ 0.34
CCDC40-202ENST00000374876 HOXA13P31271 388 aaPredicted RBP17.18■□□□□ 0.34
CCDC40-202ENST00000374876 CHP1Q99653 195 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 EPN1Q9Y6I3 576 aaPredicted RBP17.18■□□□□ 0.34
CCDC40-202ENST00000374876 PLXNA1Q9UIW2 1896 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 ASTN1O14525 1302 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 CTAGE9A4FU28 777 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 NDUFA10O95299 355 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 IDEP14735 1019 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 CLCN6P51797 869 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 TRAF1Q13077 416 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms