RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 TMEM74Q96NL1 305 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 TDRD3Q9H7E2 651 aaKnown RBP4.16□□□□□ -1.74
MCF2-202ENST00000370573 RAD18Q9NS91 495 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 MCM9Q9NXL9 1143 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 MSRB2Q9Y3D2 182 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 CYP46A1Q9Y6A2 500 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 UTRNP46939 3433 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 FLT1P17948 1338 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 NEDD4P46934 1319 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 MEGF11A6BM72 1044 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 B3GALT4O96024 378 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 ITPKAP23677 461 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 MAP4P27816 1152 aaKnown RBP4.16□□□□□ -1.74
MCF2-202ENST00000370573 PSMA5P28066 241 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 USP11P51784 963 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 AK2P54819 239 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 ANTXR2P58335 489 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 SQSTM1Q13501 440 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 DLGAP5Q15398 846 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 MAP3K11Q16584 847 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 AKNAD1Q5T1N1 836 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 C12orf60Q5U649 245 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 CDPF1Q6NVV7 123 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 BLOC1S2Q6QNY1 142 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 CHST3Q7LGC8 479 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 KIAA0907Q7Z7F0 614 aaPredicted RBP4.16□□□□□ -1.74
MCF2-202ENST00000370573 DPF2Q92785 391 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 DYNLL2Q96FJ2 89 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 SHDQ96IW2 340 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 RHOVQ96L33 236 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 MFSD14AQ96MC6 490 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 CORO1BQ9BR76 489 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 FAM126AQ9BYI3 521 aaPredicted RBP4.16□□□□□ -1.74
MCF2-202ENST00000370573 LRRC2Q9BYS8 371 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 ALDH8A1Q9H2A2 487 aaPredicted RBP4.16□□□□□ -1.74
MCF2-202ENST00000370573 PDRG1Q9NUG6 133 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 RNF181Q9P0P0 153 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 ZNF70Q9UC06 446 aaPredicted RBP4.16□□□□□ -1.74
MCF2-202ENST00000370573 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.16□□□□□ -1.74
MCF2-202ENST00000370573 LAMA4Q16363 1823 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 ASTN2O75129 1339 aaPredicted RBP4.15□□□□□ -1.74
MCF2-202ENST00000370573 CCDC194A0A1B0GVG4 234 aa4.15□□□□□ -1.74
MCF2-202ENST00000370573 DDNO94850 711 aaPredicted RBP4.15□□□□□ -1.74
MCF2-202ENST00000370573 RPS12P25398 132 aaKnown RBP4.15□□□□□ -1.74
MCF2-202ENST00000370573 PICALMQ13492 652 aa4.15□□□□□ -1.74
MCF2-202ENST00000370573 TOB2Q14106 344 aaPredicted RBP4.15□□□□□ -1.74
MCF2-202ENST00000370573 NFKBIBQ15653 356 aa4.15□□□□□ -1.74
MCF2-202ENST00000370573 CCDC85BQ15834 202 aaPredicted RBP4.15□□□□□ -1.74
MCF2-202ENST00000370573 NBPF9Q3BBW0 867 aa4.15□□□□□ -1.74
MCF2-202ENST00000370573 CCDC181Q5TID7 509 aa4.15□□□□□ -1.74
MCF2-202ENST00000370573 SHISA5Q8N114 240 aa4.15□□□□□ -1.74
MCF2-202ENST00000370573 SMG8Q8ND04 991 aaKnown RBP4.15□□□□□ -1.74
MCF2-202ENST00000370573 FAM83CQ9BQN1 747 aa4.15□□□□□ -1.74
MCF2-202ENST00000370573 IER2Q9BTL4 223 aa4.15□□□□□ -1.74
MCF2-202ENST00000370573 IDI2Q9BXS1 227 aa4.15□□□□□ -1.74
MCF2-202ENST00000370573 MYOZ2Q9NPC6 264 aa4.15□□□□□ -1.74
MCF2-202ENST00000370573 ST7Q9NRC1 585 aa4.15□□□□□ -1.74
MCF2-202ENST00000370573 CNOT7Q9UIV1 285 aaKnown RBP4.15□□□□□ -1.74
MCF2-202ENST00000370573 RNF112Q9ULX5 631 aa4.15□□□□□ -1.74
MCF2-202ENST00000370573 PPT2Q9UMR5 302 aa4.15□□□□□ -1.74
MCF2-202ENST00000370573 FOCADQ5VW36 1801 aa4.15□□□□□ -1.74
MCF2-202ENST00000370573 TIAM2Q8IVF5 1701 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 CLRN2A0PK11 232 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 DDTLA6NHG4 134 aaPredicted RBP4.15□□□□□ -1.75
MCF2-202ENST00000370573 B4E1Z4 1266 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 WNT10BO00744 389 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 SMAD7O15105 426 aaKnown RBP4.15□□□□□ -1.75
MCF2-202ENST00000370573 PRC1O43663 620 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 GREM1O60565 184 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 PRDM1O75626 825 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 MED26O95402 600 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 TIAF1O95411 115 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 LARGE1O95461 756 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 EPS15P42566 896 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 SOX4Q06945 474 aaPredicted RBP4.15□□□□□ -1.75
MCF2-202ENST00000370573 TCP10Q12799 353 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 RNF43Q68DV7 783 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 MFSD6Q6ZSS7 791 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 Q6ZUG5 572 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 DYMQ7RTS9 669 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 CLEC10AQ8IUN9 316 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 RAVER1Q8IY67 606 aaKnown RBP4.15□□□□□ -1.75
MCF2-202ENST00000370573 GPC2Q8N158 579 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 SLC44A5Q8NCS7 719 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 NCOA7Q8NI08 942 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 WDR89Q96FK6 387 aaPredicted RBP4.15□□□□□ -1.75
MCF2-202ENST00000370573 TMX3Q96JJ7 454 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 OSBPL5Q9H0X9 879 aaPredicted RBP4.15□□□□□ -1.75
MCF2-202ENST00000370573 ZSWIM5Q9P217 1185 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 ARPP21Q9UBL0 812 aaPredicted RBP4.15□□□□□ -1.75
MCF2-202ENST00000370573 PRKAG3Q9UGI9 489 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 PGAP2Q9UHJ9 254 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 GPN3Q9UHW5 284 aaPredicted RBP4.15□□□□□ -1.75
MCF2-202ENST00000370573 HDAC9Q9UKV0 1011 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 TPCN1Q9ULQ1 816 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 AP4E1Q9UPM8 1137 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 MYH1P12882 1939 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 ECM29Q5VYK3 1845 aa4.15□□□□□ -1.75
MCF2-202ENST00000370573 DDX60LQ5H9U9 1706 aaKnown RBP4.15□□□□□ -1.75
MCF2-202ENST00000370573 CNTNAP1P78357 1384 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms