RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 SEPT9Q9UHD8 586 aaPredicted RBP16.66■□□□□ 0.26
COL9A1-204ENST00000370496 TREHO43280 583 aa16.65■□□□□ 0.26
COL9A1-204ENST00000370496 DKC1O60832 514 aaKnown RBP eCLIP16.65■□□□□ 0.26
COL9A1-204ENST00000370496 CYP2C18P33260 490 aa16.65■□□□□ 0.26
COL9A1-204ENST00000370496 TECP42680 631 aa16.65■□□□□ 0.26
COL9A1-204ENST00000370496 QARSP47897 775 aaKnown RBP16.65■□□□□ 0.26
COL9A1-204ENST00000370496 PSMC5P62195 406 aa16.65■□□□□ 0.26
COL9A1-204ENST00000370496 CYP4A11Q02928 519 aa16.65■□□□□ 0.26
COL9A1-204ENST00000370496 EPHA7Q15375 998 aa16.65■□□□□ 0.26
COL9A1-204ENST00000370496 FOXD4L5Q5VV16 416 aaPredicted RBP16.65■□□□□ 0.26
COL9A1-204ENST00000370496 SERINC5Q86VE9 423 aa16.65■□□□□ 0.26
COL9A1-204ENST00000370496 NEK9Q8TD19 979 aa16.65■□□□□ 0.26
COL9A1-204ENST00000370496 TRAPPC12Q8WVT3 735 aa16.65■□□□□ 0.26
COL9A1-204ENST00000370496 FOXD4L4Q8WXT5 416 aaPredicted RBP16.65■□□□□ 0.26
COL9A1-204ENST00000370496 BADQ92934 168 aa16.65■□□□□ 0.26
COL9A1-204ENST00000370496 CTAGE1Q96RT6 745 aa16.65■□□□□ 0.26
COL9A1-204ENST00000370496 RAB34Q9BZG1 259 aa16.65■□□□□ 0.26
COL9A1-204ENST00000370496 CEP131Q9UPN4 1083 aa16.65■□□□□ 0.26
COL9A1-204ENST00000370496 UMODL1Q5DID0 1318 aa16.65■□□□□ 0.26
COL9A1-204ENST00000370496 PITPNM1O00562 1244 aa16.64■□□□□ 0.26
COL9A1-204ENST00000370496 ZNF862O60290 1169 aa16.64■□□□□ 0.26
COL9A1-204ENST00000370496 BMP15O95972 392 aa16.64■□□□□ 0.26
COL9A1-204ENST00000370496 P4HBP07237 508 aaKnown RBP16.64■□□□□ 0.26
COL9A1-204ENST00000370496 ATP4AP20648 1035 aa16.64■□□□□ 0.26
COL9A1-204ENST00000370496 ITGB8P26012 769 aa16.64■□□□□ 0.26
COL9A1-204ENST00000370496 ATP2C1P98194 919 aaPredicted RBP16.64■□□□□ 0.26
COL9A1-204ENST00000370496 FPGSQ05932 587 aa16.64■□□□□ 0.26
COL9A1-204ENST00000370496 ZNF484Q5JVG2 852 aa16.64■□□□□ 0.26
COL9A1-204ENST00000370496 TMEM199Q8N511 208 aa16.64■□□□□ 0.26
COL9A1-204ENST00000370496 RETREG2Q8NC44 543 aa16.64■□□□□ 0.26
COL9A1-204ENST00000370496 ERMNQ8TAM6 284 aa16.64■□□□□ 0.26
COL9A1-204ENST00000370496 DHX38Q92620 1227 aaKnown RBP16.64■□□□□ 0.26
COL9A1-204ENST00000370496 DYDC2Q96IM9 177 aa16.64■□□□□ 0.26
COL9A1-204ENST00000370496 ZSCAN22P10073 491 aaPredicted RBP16.64■□□□□ 0.25
COL9A1-204ENST00000370496 ANP32AP39687 249 aaKnown RBP16.64■□□□□ 0.25
COL9A1-204ENST00000370496 THPOP40225 353 aa16.64■□□□□ 0.25
COL9A1-204ENST00000370496 PRPHP41219 470 aa16.64■□□□□ 0.25
COL9A1-204ENST00000370496 FXR2P51116 673 aaKnown RBP eCLIP16.64■□□□□ 0.25
COL9A1-204ENST00000370496 CCL23P55773 120 aa16.64■□□□□ 0.25
COL9A1-204ENST00000370496 XKR3Q5GH77 459 aa16.64■□□□□ 0.25
COL9A1-204ENST00000370496 HAUS3Q68CZ6 603 aa16.64■□□□□ 0.25
COL9A1-204ENST00000370496 MFSD5Q6N075 450 aa16.64■□□□□ 0.25
COL9A1-204ENST00000370496 TAF2Q6P1X5 1199 aa16.64■□□□□ 0.25
COL9A1-204ENST00000370496 CHRDL2Q6WN34 429 aa16.64■□□□□ 0.25
COL9A1-204ENST00000370496 DTHD1Q6ZMT9 781 aa16.64■□□□□ 0.25
COL9A1-204ENST00000370496 EIF2AK1Q9BQI3 630 aaKnown RBP16.64■□□□□ 0.25
COL9A1-204ENST00000370496 WNT8AQ9H1J5 351 aa16.64■□□□□ 0.25
COL9A1-204ENST00000370496 NRBP2Q9NSY0 501 aa16.64■□□□□ 0.25
COL9A1-204ENST00000370496 RGL1Q9NZL6 768 aa16.64■□□□□ 0.25
COL9A1-204ENST00000370496 SCN5AQ14524 2016 aa16.63■□□□□ 0.25
COL9A1-204ENST00000370496 MBLAC1A4D2B0 266 aaPredicted RBP16.63■□□□□ 0.25
COL9A1-204ENST00000370496 CTSHP09668 335 aa16.63■□□□□ 0.25
COL9A1-204ENST00000370496 SELPP16109 830 aa16.63■□□□□ 0.25
COL9A1-204ENST00000370496 ADAM17P78536 824 aa16.63■□□□□ 0.25
COL9A1-204ENST00000370496 PPIGQ13427 754 aaKnown RBP eCLIP16.63■□□□□ 0.25
COL9A1-204ENST00000370496 CTTNQ14247 550 aaKnown RBP16.63■□□□□ 0.25
COL9A1-204ENST00000370496 SF3A1Q15459 793 aaKnown RBP16.63■□□□□ 0.25
COL9A1-204ENST00000370496 MTERF2Q49AM1 385 aa16.63■□□□□ 0.25
COL9A1-204ENST00000370496 FAM173BQ6P4H8 233 aa16.63■□□□□ 0.25
COL9A1-204ENST00000370496 RUFY4Q6ZNE9 571 aa16.63■□□□□ 0.25
COL9A1-204ENST00000370496 LRRC8DQ7L1W4 858 aa16.63■□□□□ 0.25
COL9A1-204ENST00000370496 C4orf32Q8N8J7 132 aa16.63■□□□□ 0.25
COL9A1-204ENST00000370496 WNT8BQ93098 351 aa16.63■□□□□ 0.25
COL9A1-204ENST00000370496 CCDC43Q96MW1 224 aaKnown RBP16.63■□□□□ 0.25
COL9A1-204ENST00000370496 UBE2OQ9C0C9 1292 aaKnown RBP16.63■□□□□ 0.25
COL9A1-204ENST00000370496 FAM49AQ9H0Q0 323 aaPredicted RBP16.63■□□□□ 0.25
COL9A1-204ENST00000370496 ZSWIM4Q9H7M6 989 aa16.63■□□□□ 0.25
COL9A1-204ENST00000370496 LRWD1Q9UFC0 647 aa16.63■□□□□ 0.25
COL9A1-204ENST00000370496 SIP14410 1827 aa16.62■□□□□ 0.25
COL9A1-204ENST00000370496 DDX11L8A8MPP1 907 aa16.62■□□□□ 0.25
COL9A1-204ENST00000370496 F13A1P00488 732 aa16.62■□□□□ 0.25
COL9A1-204ENST00000370496 CKBP12277 381 aa16.62■□□□□ 0.25
COL9A1-204ENST00000370496 RBL2Q08999 1139 aa16.62■□□□□ 0.25
COL9A1-204ENST00000370496 PKP1Q13835 747 aa16.62■□□□□ 0.25
COL9A1-204ENST00000370496 MARCH8Q5T0T0 291 aa16.62■□□□□ 0.25
COL9A1-204ENST00000370496 PLA2G4FQ68DD2 849 aa16.62■□□□□ 0.25
COL9A1-204ENST00000370496 MTHFD1LQ6UB35 978 aa16.62■□□□□ 0.25
COL9A1-204ENST00000370496 RSPH3Q86UC2 560 aa16.62■□□□□ 0.25
COL9A1-204ENST00000370496 TPH2Q8IWU9 490 aa16.62■□□□□ 0.25
COL9A1-204ENST00000370496 ZBTB10Q96DT7 871 aa16.62■□□□□ 0.25
COL9A1-204ENST00000370496 SCLYQ96I15 445 aa16.62■□□□□ 0.25
COL9A1-204ENST00000370496 FTOQ9C0B1 505 aaKnown RBP eCLIP16.62■□□□□ 0.25
COL9A1-204ENST00000370496 LOXHD1Q8IVV2 1947 aa16.61■□□□□ 0.25
COL9A1-204ENST00000370496 TMEM150BA6NC51 233 aa16.61■□□□□ 0.25
COL9A1-204ENST00000370496 VWA3AA6NCI4 1184 aa16.61■□□□□ 0.25
COL9A1-204ENST00000370496 ZBTB42B2RXF5 422 aa16.61■□□□□ 0.25
COL9A1-204ENST00000370496 CAND2O75155 1236 aa16.61■□□□□ 0.25
COL9A1-204ENST00000370496 C22orf31O95567 290 aa16.61■□□□□ 0.25
COL9A1-204ENST00000370496 RPLP2P05387 115 aaKnown RBP16.61■□□□□ 0.25
COL9A1-204ENST00000370496 CSF2RAP15509 400 aa16.61■□□□□ 0.25
COL9A1-204ENST00000370496 YWHABP31946 246 aaKnown RBP16.61■□□□□ 0.25
COL9A1-204ENST00000370496 CEBPZQ03701 1054 aaKnown RBP16.61■□□□□ 0.25
COL9A1-204ENST00000370496 TBC1D8BQ0IIM8 1120 aa16.61■□□□□ 0.25
COL9A1-204ENST00000370496 TRIM71Q2Q1W2 868 aaKnown RBP16.61■□□□□ 0.25
COL9A1-204ENST00000370496 ARL6IP4Q66PJ3 421 aaKnown RBP16.61■□□□□ 0.25
COL9A1-204ENST00000370496 C4orf19Q8IY42 314 aa16.61■□□□□ 0.25
COL9A1-204ENST00000370496 GDF15Q99988 308 aa16.61■□□□□ 0.25
COL9A1-204ENST00000370496 WRAP73Q9P2S5 460 aaPredicted RBP16.61■□□□□ 0.25
COL9A1-204ENST00000370496 DAXXQ9UER7 740 aaPredicted RBP16.61■□□□□ 0.25
COL9A1-204ENST00000370496 M0QZ92 97 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms