RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 CCL15Q16663 113 aa9.96□□□□□ -0.82
TPM3-213ENST00000368545 PFKFB3Q16875 520 aaPredicted RBP9.96□□□□□ -0.82
TPM3-213ENST00000368545 ASPRV1Q53RT3 343 aa9.96□□□□□ -0.82
TPM3-213ENST00000368545 PEAR1Q5VY43 1037 aaPredicted RBP9.96□□□□□ -0.82
TPM3-213ENST00000368545 TMEM179Q6ZVK1 233 aa9.96□□□□□ -0.82
TPM3-213ENST00000368545 LILRB2Q8N423 598 aa9.96□□□□□ -0.82
TPM3-213ENST00000368545 RTEL1Q9NZ71 1219 aa9.96□□□□□ -0.82
TPM3-213ENST00000368545 ASTN2O75129 1339 aaPredicted RBP9.96□□□□□ -0.82
TPM3-213ENST00000368545 CLRN2A0PK11 232 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 GREM1O60565 184 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 SCG2P13521 617 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 ATP4AP20648 1035 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 CES1P23141 567 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 PCNX4Q63HM2 1172 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 CCDC81Q6ZN84 652 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 LRRC69Q6ZNQ3 347 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 ANKRD23Q86SG2 305 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 NOSTRINQ8IVI9 506 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 CELF2-AS1Q8N7Q2 184 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 PHC3Q8NDX5 983 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 PHF20Q9BVI0 1012 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 VEZTQ9HBM0 779 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 SH3GLB2Q9NR46 395 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 GJB4Q9NTQ9 266 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 NYAP2Q9P242 653 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 RCOR1Q9UKL0 485 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 SYNPO2Q9UMS6 1093 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 GPC6Q9Y625 555 aaPredicted RBP9.95□□□□□ -0.82
TPM3-213ENST00000368545 KIAA0100Q14667 2235 aaKnown RBP9.95□□□□□ -0.82
TPM3-213ENST00000368545 KIF28PB7ZC32 967 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 SNHG28P0DPA3 235 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 PDHBP11177 359 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 GPATCH4Q5T3I0 446 aaKnown RBP9.95□□□□□ -0.82
TPM3-213ENST00000368545 DIS3L2Q8IYB7 885 aaKnown RBP9.95□□□□□ -0.82
TPM3-213ENST00000368545 KCNG4Q8TDN1 519 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 USP28Q96RU2 1077 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 DNAJC7Q99615 494 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 CDX2Q99626 313 aaPredicted RBP9.95□□□□□ -0.82
TPM3-213ENST00000368545 PTPN18Q99952 460 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 LBHD1Q9BQE6 289 aaPredicted RBP9.95□□□□□ -0.82
TPM3-213ENST00000368545 OXCT2Q9BYC2 517 aaPredicted RBP9.95□□□□□ -0.82
TPM3-213ENST00000368545 C11orf49Q9H6J7 331 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.95□□□□□ -0.82
TPM3-213ENST00000368545 PAK6Q9NQU5 681 aaPredicted RBP9.95□□□□□ -0.82
TPM3-213ENST00000368545 CLIP2Q9UDT6 1046 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 R3HCC1Q9Y3T6 440 aaKnown RBP9.95□□□□□ -0.82
TPM3-213ENST00000368545 CSADQ9Y600 493 aa9.95□□□□□ -0.82
TPM3-213ENST00000368545 BAZ2BQ9UIF8 2168 aaKnown RBP9.94□□□□□ -0.82
TPM3-213ENST00000368545 ATAD5Q96QE3 1844 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 KLRF2D3W0D1 207 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 CALML3P27482 149 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 GPC1P35052 558 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 KRT2P35908 639 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 SNAPC2Q13487 334 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 COL9A2Q14055 689 aaPredicted RBP9.94□□□□□ -0.82
TPM3-213ENST00000368545 ABCB5Q2M3G0 1257 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 C17orf99Q6UX52 265 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 C7orf61Q8IZ16 206 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 CCDC148Q8NFR7 591 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 SHDQ96IW2 340 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 DEFB129Q9H1M3 183 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 CABP5Q9NP86 173 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.94□□□□□ -0.82
TPM3-213ENST00000368545 VPS54Q9P1Q0 977 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 WASF2Q9Y6W5 498 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 hCG_1984214I3L0E3 225 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 PF4P02776 101 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 FOSL2P15408 326 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 PSMC4P43686 418 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 ZNF445P59923 1031 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 AMPD3Q01432 767 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 ICA1Q05084 483 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 ZSCAN23Q3MJ62 389 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 RILPL1Q5EBL4 403 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 CCDC183Q5T5S1 534 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 LRRC47Q8N1G4 583 aaKnown RBP9.94□□□□□ -0.82
TPM3-213ENST00000368545 ZNF713Q8N859 430 aaPredicted RBP9.94□□□□□ -0.82
TPM3-213ENST00000368545 OPTNQ96CV9 577 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 KANSL3Q9P2N6 904 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 KCNJ14Q9UNX9 436 aa9.94□□□□□ -0.82
TPM3-213ENST00000368545 ESYT3A0FGR9 886 aa9.93□□□□□ -0.82
TPM3-213ENST00000368545 BTBD18B2RXH4 712 aa9.93□□□□□ -0.82
TPM3-213ENST00000368545 SMAD7O15105 426 aaKnown RBP9.93□□□□□ -0.82
TPM3-213ENST00000368545 LETM1O95202 739 aaPredicted RBP9.93□□□□□ -0.82
TPM3-213ENST00000368545 AAK1Q2M2I8 961 aa9.93□□□□□ -0.82
TPM3-213ENST00000368545 NBPF9Q3BBW0 867 aa9.93□□□□□ -0.82
TPM3-213ENST00000368545 PLEKHG6Q3KR16 790 aa9.93□□□□□ -0.82
TPM3-213ENST00000368545 ANO1Q5XXA6 986 aa9.93□□□□□ -0.82
TPM3-213ENST00000368545 LHX8Q68G74 356 aa9.93□□□□□ -0.82
TPM3-213ENST00000368545 GALNT17Q6IS24 598 aa9.93□□□□□ -0.82
TPM3-213ENST00000368545 GOLM1Q8NBJ4 401 aa9.93□□□□□ -0.82
TPM3-213ENST00000368545 LINC00301Q8NCQ3 95 aa9.93□□□□□ -0.82
TPM3-213ENST00000368545 CCDC12Q8WUD4 166 aaPredicted RBP9.93□□□□□ -0.82
TPM3-213ENST00000368545 BRI3BPQ8WY22 251 aa9.93□□□□□ -0.82
TPM3-213ENST00000368545 RRP36Q96EU6 259 aaKnown RBP9.93□□□□□ -0.82
TPM3-213ENST00000368545 SRRTQ9BXP5 876 aaKnown RBP9.93□□□□□ -0.82
TPM3-213ENST00000368545 SEMA6BQ9H3T3 888 aa9.93□□□□□ -0.82
TPM3-213ENST00000368545 ABCB6Q9NP58 842 aa9.93□□□□□ -0.82
TPM3-213ENST00000368545 SEC63Q9UGP8 760 aaKnown RBP9.93□□□□□ -0.82
TPM3-213ENST00000368545 PPM1HQ9ULR3 514 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms