RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 EXOC3O60645 756 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 CREB1P16220 341 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 OR1G1P47890 313 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 HMGCS2P54868 508 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 GEMIN4P57678 1058 aaKnown RBP4.44□□□□□ -1.7
USH2A-202ENST00000366942 NOP14P78316 857 aaKnown RBP4.44□□□□□ -1.7
USH2A-202ENST00000366942 MRPS5P82675 430 aaKnown RBP4.44□□□□□ -1.7
USH2A-202ENST00000366942 PPP2R3AQ06190 1150 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 FAM47EQ6ZV65 393 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 SCYL3Q8IZE3 742 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 CCDC110Q8TBZ0 833 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 SUSD6Q92537 303 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 L3MBTL3Q96JM7 780 aaPredicted RBP4.44□□□□□ -1.7
USH2A-202ENST00000366942 MMRN2Q9H8L6 949 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 C1orf112Q9NSG2 853 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 ASB3Q9Y575 518 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 ADGRL3Q9HAR2 1447 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 UGGT2Q9NYU1 1516 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 A6NJR5 290 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 KRT37O76014 449 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 ERCC1P07992 297 aaPredicted RBP4.44□□□□□ -1.7
USH2A-202ENST00000366942 HTR1BP28222 390 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 SFNP31947 248 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 KRT9P35527 623 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 CASRP41180 1078 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 EVCP57679 992 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 SATB1Q01826 763 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 ALCAMQ13740 583 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 ZNF280DQ6N043 979 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 BZW1Q7L1Q6 419 aaKnown RBP4.44□□□□□ -1.7
USH2A-202ENST00000366942 CPA6Q8N4T0 437 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 AVL9Q8NBF6 648 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 NEK11Q8NG66 645 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 TNIP3Q96KP6 325 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 JAKMIP1Q96N16 626 aaKnown RBP4.44□□□□□ -1.7
USH2A-202ENST00000366942 MAGEB5Q9BZ81 275 aa4.44□□□□□ -1.7
USH2A-202ENST00000366942 GLIS2Q9BZE0 524 aaPredicted RBP4.44□□□□□ -1.7
USH2A-202ENST00000366942 RPAP3Q9H6T3 665 aaPredicted RBP4.44□□□□□ -1.7
USH2A-202ENST00000366942 NOP58Q9Y2X3 529 aaKnown RBP4.44□□□□□ -1.7
USH2A-202ENST00000366942 PATL2C9JE40 543 aaKnown RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 PEX12O00623 359 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 CASKO14936 926 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 RFC2P35250 354 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 PSEN2P49810 448 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 TGM3Q08188 693 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 SCGB2A2Q13296 93 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 MKRN4PQ13434 485 aaPredicted RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 NFE2Q16621 373 aaPredicted RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 KANK4Q5T7N3 995 aaPredicted RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 SYDE2Q5VT97 1194 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 XRRA1Q6P2D8 792 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 VPS52Q8N1B4 723 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 ANKRD13CQ8N6S4 541 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 CDCA5Q96FF9 252 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 RTP3Q9BQQ7 232 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 NEMP2A6NFY4 417 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 PDHXO00330 501 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 ATP5BP06576 529 aaKnown RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 BCRP11274 1271 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 MNAT1P51948 309 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 TFAP4Q01664 338 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 KYNUQ16719 465 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 ARNTL2Q8WYA1 636 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 TRIM56Q9BRZ2 755 aaKnown RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 NLRC4Q9NPP4 1024 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 PAG1Q9NWQ8 432 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 DUOX2Q9NRD8 1548 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 SNTNA6NMZ2 147 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 DLL1O00548 723 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 AP1G2O75843 785 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 HSPA8P11142 646 aaKnown RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 ERCC3P19447 782 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 ERCC5P28715 1186 aaPredicted RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 HPDP32754 393 aaPredicted RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 KRT2P35908 639 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 CLCN6P51797 869 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 INHBCP55103 352 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 TMEM132DQ14C87 1099 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 CCDC85BQ15834 202 aaPredicted RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 LONRF3Q496Y0 759 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 FAM46CQ5VWP2 391 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 TRIM58Q8NG06 486 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 DCAF4Q8WV16 495 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 RPGRIP1Q96KN7 1286 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 PPP1R13BQ96KQ4 1090 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 CEP170P1Q96L14 293 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 PANX2Q96RD6 677 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 NUP58Q9BVL2 599 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 ABHD16BQ9H3Z7 469 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 CLSTN2Q9H4D0 955 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 ERCC6L2Q5T890 1561 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 MAP3K19Q56UN5 1328 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 PPP6R2O75170 966 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 GCFC2P16383 781 aaKnown RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 DHPSP49366 369 aaPredicted RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 KPNA2P52292 529 aaKnown RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 GRSF1Q12849 480 aaKnown RBP eCLIP4.43□□□□□ -1.7
USH2A-202ENST00000366942 PPIL2Q13356 520 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 HNRNPDQ14103 355 aaKnown RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 PDE12Q6L8Q7 609 aaKnown RBP4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms