RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 TMEM39BQ9GZU3 492 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 VEZTQ9HBM0 779 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 PDE11AQ9HCR9 933 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 ZNF277Q9NRM2 450 aaPredicted RBP22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 OLFML3Q9NRN5 406 aa22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 MRPL11Q9Y3B7 192 aaKnown RBP22.9■■□□□ 1.26
CCDC88B-203ENST00000359902 AFPP02771 609 aaKnown RBP22.89■■□□□ 1.25
CCDC88B-203ENST00000359902 NR3C1P04150 777 aa22.89■■□□□ 1.25
CCDC88B-203ENST00000359902 KCNA1Q09470 495 aa22.89■■□□□ 1.25
CCDC88B-203ENST00000359902 C1orf186Q6ZWK4 172 aa22.89■■□□□ 1.25
CCDC88B-203ENST00000359902 ZNF572Q7Z3I7 529 aaPredicted RBP22.89■■□□□ 1.25
CCDC88B-203ENST00000359902 OSBPL9Q96SU4 736 aa22.89■■□□□ 1.25
CCDC88B-203ENST00000359902 ZBTB39O15060 712 aa22.88■■□□□ 1.25
CCDC88B-203ENST00000359902 CHMP2AO43633 222 aa22.88■■□□□ 1.25
CCDC88B-203ENST00000359902 ACTN1P12814 892 aa22.88■■□□□ 1.25
CCDC88B-203ENST00000359902 GAP43P17677 238 aa22.88■■□□□ 1.25
CCDC88B-203ENST00000359902 SLC9A1P19634 815 aa22.88■■□□□ 1.25
CCDC88B-203ENST00000359902 CEP55Q53EZ4 464 aa22.88■■□□□ 1.25
CCDC88B-203ENST00000359902 FKBP1CQ5VVH2 108 aa22.88■■□□□ 1.25
CCDC88B-203ENST00000359902 FAM133AQ8N9E0 248 aa22.88■■□□□ 1.25
CCDC88B-203ENST00000359902 NOX5Q96PH1 765 aa22.88■■□□□ 1.25
CCDC88B-203ENST00000359902 PLCB1Q9NQ66 1216 aa22.88■■□□□ 1.25
CCDC88B-203ENST00000359902 COL4A5P29400 1685 aa22.88■■□□□ 1.25
CCDC88B-203ENST00000359902 MCM3P25205 808 aa22.88■■□□□ 1.25
CCDC88B-203ENST00000359902 ARID5AQ03989 594 aa22.88■■□□□ 1.25
CCDC88B-203ENST00000359902 EN1Q05925 392 aaPredicted RBP22.88■■□□□ 1.25
CCDC88B-203ENST00000359902 SLC18A3Q16572 532 aa22.88■■□□□ 1.25
CCDC88B-203ENST00000359902 IQCEQ6IPM2 695 aa22.88■■□□□ 1.25
CCDC88B-203ENST00000359902 NFRKBQ6P4R8 1299 aa22.88■■□□□ 1.25
CCDC88B-203ENST00000359902 CAMKK2Q96RR4 588 aa22.88■■□□□ 1.25
CCDC88B-203ENST00000359902 BUB1O43683 1085 aa22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 XRCC5P13010 732 aaKnown RBP22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 TCP1P17987 556 aaKnown RBP22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 RPL13P26373 211 aaKnown RBP22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 CAP2P40123 477 aa22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 CASP4P49662 377 aa22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 C2orf54Q08AI8 447 aa22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 KLHL30Q0D2K2 578 aa22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 ASIC2Q16515 512 aa22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 FAM160B2Q86V87 743 aa22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 ZFP91Q96JP5 570 aaPredicted RBP22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 GLIS2Q9BZE0 524 aaPredicted RBP22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 FBXO28Q9NVF7 368 aa22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 HYOU1Q9Y4L1 999 aa22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 A0A087X0T9 212 aa22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 TGFB1I1O43294 461 aa22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 GAS7O60861 476 aa22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 FAM228BP0C875 321 aa22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 PRELPP51888 382 aa22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 ITIH3Q06033 890 aa22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 KLHDC7AQ5VTJ3 777 aa22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 LDHDQ86WU2 507 aa22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 TLR10Q9BXR5 811 aa22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 PDGFDQ9GZP0 370 aaPredicted RBP22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 METTL14Q9HCE5 456 aaKnown RBP22.87■■□□□ 1.25
CCDC88B-203ENST00000359902 CLIC2O15247 247 aa22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 SLC16A3O15427 465 aaKnown RBP22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 PON1P27169 355 aa22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 SAMD1Q6SPF0 538 aaPredicted RBP22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 MMGT1Q8N4V1 131 aa22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 EHMT1Q9H9B1 1298 aa22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 LUC7LQ9NQ29 371 aaKnown RBP22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 FEM1BQ9UK73 627 aa22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 NCK2O43639 380 aa22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 EIF3JO75822 258 aaKnown RBP22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 FAM13AO94988 1023 aa22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 ARP10275 920 aa22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 UCHL3P15374 230 aa22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 CYP2C19P33261 490 aa22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 GPS2Q13227 327 aa22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 NAB2Q15742 525 aa22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 EXOC3L4Q17RC7 722 aa22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 IRF2BP2Q7Z5L9 587 aa22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 MYCT1Q8N699 235 aa22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 ZKSCAN7Q9P0L1 754 aaPredicted RBP22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 ADAMTS1Q9UHI8 967 aa22.86■■□□□ 1.25
CCDC88B-203ENST00000359902 LRRIQ3A6PVS8 624 aaPredicted RBP22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 EIF3DO15371 548 aaKnown RBP eCLIP22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 NMT1P30419 496 aaKnown RBP22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 CXCR5P32302 372 aa22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 EPHA7Q15375 998 aa22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 DCAF17Q5H9S7 520 aaPredicted RBP22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 FAM83AQ86UY5 434 aa22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 MTMR14Q8NCE2 650 aa22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 ZNF577Q9BSK1 485 aa22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 WRAP73Q9P2S5 460 aaPredicted RBP22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 PGAP2Q9UHJ9 254 aa22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 ZMYND10O75800 440 aa22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 EPB41P11171 864 aaKnown RBP22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 KCNA3P22001 575 aa22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 NAP1L1P55209 391 aaKnown RBP22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 ENOX2Q16206 610 aaKnown RBP22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 SPATA4Q8NEY3 305 aa22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 SLC35C1Q96A29 364 aa22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 PSMB7Q99436 277 aa22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 UNC45AQ9H3U1 944 aa22.85■■□□□ 1.25
CCDC88B-203ENST00000359902 ZMYM2Q9UBW7 1377 aa22.84■■□□□ 1.25
CCDC88B-203ENST00000359902 KIF13BQ9NQT8 1826 aa22.84■■□□□ 1.25
CCDC88B-203ENST00000359902 MUTP22033 750 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms