RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 PDLIM2Q96JY6 352 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 HSD3B7Q9H2F3 369 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 VTA1Q9NP79 307 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 CREBZFQ9NS37 354 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 NFE2L3Q9Y4A8 694 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 SYNGAP1Q96PV0 1343 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 RASSF10A6NK89 507 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 PSMA7O14818 248 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 TTLL4Q14679 1199 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 FAM26FQ5R3K3 315 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 SPATA1Q5VX52 437 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 METTL7BQ6UX53 244 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 CCDC60Q8IWA6 550 aaPredicted RBP20.75■□□□□ 0.91
CLN3-204ENST00000357857 SCFD2Q8WU76 684 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 DHTKD1Q96HY7 919 aaPredicted RBP20.75■□□□□ 0.91
CLN3-204ENST00000357857 ZHX3Q9H4I2 956 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 MLXIPQ9HAP2 919 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 ANKEF1Q9NU02 776 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 FANCLQ9NW38 375 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.75■□□□□ 0.91
CLN3-204ENST00000357857 TBCAO75347 108 aaKnown RBP20.74■□□□□ 0.91
CLN3-204ENST00000357857 ECM2O94769 699 aaPredicted RBP20.74■□□□□ 0.91
CLN3-204ENST00000357857 ALDH1A1P00352 501 aa20.74■□□□□ 0.91
CLN3-204ENST00000357857 RARRES1P49788 294 aa20.74■□□□□ 0.91
CLN3-204ENST00000357857 HERC4Q5GLZ8 1057 aaPredicted RBP20.74■□□□□ 0.91
CLN3-204ENST00000357857 CCDC62Q6P9F0 684 aa20.74■□□□□ 0.91
CLN3-204ENST00000357857 NPLOC4Q8TAT6 608 aa20.74■□□□□ 0.91
CLN3-204ENST00000357857 CAPNS2Q96L46 248 aa20.74■□□□□ 0.91
CLN3-204ENST00000357857 CCDC43Q96MW1 224 aaKnown RBP20.74■□□□□ 0.91
CLN3-204ENST00000357857 TRIM5Q9C035 493 aa20.74■□□□□ 0.91
CLN3-204ENST00000357857 BACH1O14867 736 aa20.73■□□□□ 0.91
CLN3-204ENST00000357857 APLP1P51693 650 aa20.73■□□□□ 0.91
CLN3-204ENST00000357857 MAP2K5Q13163 448 aa20.73■□□□□ 0.91
CLN3-204ENST00000357857 CELF3Q5SZQ8 465 aaKnown RBP20.73■□□□□ 0.91
CLN3-204ENST00000357857 PADI6Q6TGC4 694 aa20.73■□□□□ 0.91
CLN3-204ENST00000357857 PDGFCQ9NRA1 345 aa20.73■□□□□ 0.91
CLN3-204ENST00000357857 IGSF9BQ9UPX0 1349 aa20.73■□□□□ 0.91
CLN3-204ENST00000357857 ZNF862O60290 1169 aa20.73■□□□□ 0.91
CLN3-204ENST00000357857 AOC2O75106 756 aa20.73■□□□□ 0.91
CLN3-204ENST00000357857 TXNP10599 105 aaKnown RBP20.73■□□□□ 0.91
CLN3-204ENST00000357857 GUCY2CP25092 1073 aa20.73■□□□□ 0.91
CLN3-204ENST00000357857 TPD52L1Q16890 204 aaPredicted RBP20.73■□□□□ 0.91
CLN3-204ENST00000357857 TINF2Q9BSI4 451 aa20.73■□□□□ 0.91
CLN3-204ENST00000357857 ZNF302Q9NR11 478 aa20.73■□□□□ 0.91
CLN3-204ENST00000357857 PCDHA2Q9Y5H9 948 aa20.73■□□□□ 0.91
CLN3-204ENST00000357857 COL4A3BPQ9Y5P4 624 aa20.73■□□□□ 0.91
CLN3-204ENST00000357857 GSTTP1A0A1W2PQM5 241 aa20.72■□□□□ 0.91
CLN3-204ENST00000357857 RSPH10B2B2RC85 870 aa20.72■□□□□ 0.91
CLN3-204ENST00000357857 FAM13AO94988 1023 aa20.72■□□□□ 0.91
CLN3-204ENST00000357857 SNAI1O95863 264 aaPredicted RBP20.72■□□□□ 0.91
CLN3-204ENST00000357857 RSPH10BP0C881 870 aa20.72■□□□□ 0.91
CLN3-204ENST00000357857 GAP43P17677 238 aa20.72■□□□□ 0.91
CLN3-204ENST00000357857 ZNF75DP51815 510 aa20.72■□□□□ 0.91
CLN3-204ENST00000357857 TAPT1Q6NXT6 567 aa20.72■□□□□ 0.91
CLN3-204ENST00000357857 OTUD6AQ7L8S5 288 aa20.72■□□□□ 0.91
CLN3-204ENST00000357857 DHX37Q8IY37 1157 aaKnown RBP20.72■□□□□ 0.91
CLN3-204ENST00000357857 REM2Q8IYK8 340 aaPredicted RBP20.72■□□□□ 0.91
CLN3-204ENST00000357857 GUF1Q8N442 669 aaKnown RBP20.72■□□□□ 0.91
CLN3-204ENST00000357857 MSL3Q8N5Y2 521 aaKnown RBP20.72■□□□□ 0.91
CLN3-204ENST00000357857 SEPT1Q8WYJ6 367 aa20.72■□□□□ 0.91
CLN3-204ENST00000357857 KATNBL1Q9H079 304 aa20.72■□□□□ 0.91
CLN3-204ENST00000357857 TBC1D7Q9P0N9 293 aa20.72■□□□□ 0.91
CLN3-204ENST00000357857 ODF2LQ9ULJ1 636 aa20.72■□□□□ 0.91
CLN3-204ENST00000357857 IGKV6D-21A0A0A0MT36 114 aa20.71■□□□□ 0.91
CLN3-204ENST00000357857 RBM47A0AV96 593 aaKnown RBP20.71■□□□□ 0.91
CLN3-204ENST00000357857 TMEM150BA6NC51 233 aa20.71■□□□□ 0.91
CLN3-204ENST00000357857 ZNF18P17022 549 aa20.71■□□□□ 0.91
CLN3-204ENST00000357857 CCNE1P24864 410 aa20.71■□□□□ 0.91
CLN3-204ENST00000357857 PRKCEQ02156 737 aa20.71■□□□□ 0.91
CLN3-204ENST00000357857 XKR9Q5GH70 373 aa20.71■□□□□ 0.91
CLN3-204ENST00000357857 UTP14CQ5TAP6 766 aaKnown RBP20.71■□□□□ 0.91
CLN3-204ENST00000357857 ANO5Q75V66 913 aa20.71■□□□□ 0.91
CLN3-204ENST00000357857 SFR1Q86XK3 245 aa20.71■□□□□ 0.91
CLN3-204ENST00000357857 P2RX5Q93086 422 aa20.71■□□□□ 0.91
CLN3-204ENST00000357857 SAMSN1Q9NSI8 373 aaKnown RBP20.71■□□□□ 0.91
CLN3-204ENST00000357857 MAFBQ9Y5Q3 323 aaPredicted RBP20.71■□□□□ 0.91
CLN3-204ENST00000357857 BICDL2A1A5D9 508 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 STBD1O95210 358 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 ATP1A3P13637 1013 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 LRRC41Q15345 812 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 PLA2G4FQ68DD2 849 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 TRMT1LQ7Z2T5 733 aaKnown RBP20.7■□□□□ 0.9
CLN3-204ENST00000357857 MYOCDQ8IZQ8 938 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 TRIM49BA6NDI0 452 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 TNPO2O14787 897 aaKnown RBP20.7■□□□□ 0.9
CLN3-204ENST00000357857 USO1O60763 962 aaKnown RBP20.7■□□□□ 0.9
CLN3-204ENST00000357857 HOXC6P09630 235 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 PMS1P54277 932 aaKnown RBP20.7■□□□□ 0.9
CLN3-204ENST00000357857 FANCCQ00597 558 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 XKR3Q5GH77 459 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 FAM160B1Q5W0V3 765 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 GLIS3Q8NEA6 775 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 SOCS4Q8WXH5 440 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 USP6NLQ92738 828 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 COPS5Q92905 334 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 GPR20Q99678 358 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 ABHD16BQ9H3Z7 469 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 PARVGQ9HBI0 331 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 POLD4Q9HCU8 107 aa20.7■□□□□ 0.9
CLN3-204ENST00000357857 NOP56O00567 594 aaKnown RBP20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms