RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SLC39A2Q9NP94 309 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 SETD4Q9NVD3 440 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 A0A1W2PQ27 194 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 A0A1W2PQ64 194 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 A0A1W2PQD8 194 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 CCDC169A6NNP5 214 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 FSCN1Q16658 493 aaKnown RBP10.26□□□□□ -0.77
USP4-202ENST00000351842 CCDC183Q5T5S1 534 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 CCDC62Q6P9F0 684 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 MOXD1Q6UVY6 613 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 NELFCDQ8IXH7 590 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 TRMT44Q8IYL2 757 aaKnown RBP10.26□□□□□ -0.77
USP4-202ENST00000351842 FAM177A1Q8N128 213 aaPredicted RBP10.26□□□□□ -0.77
USP4-202ENST00000351842 TMEM87AQ8NBN3 555 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 GLIS3Q8NEA6 775 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 GPR20Q99678 358 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 MTRQ99707 1265 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 DNAJC25Q9H1X3 360 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 IKZF4Q9H2S9 585 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 ZSWIM4Q9H7M6 989 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 SPC25Q9HBM1 224 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 HMX1Q9NP08 348 aaPredicted RBP10.26□□□□□ -0.77
USP4-202ENST00000351842 P4HBP07237 508 aaKnown RBP10.26□□□□□ -0.77
USP4-202ENST00000351842 SUPT20HL2P0C7V6 817 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 POLGP54098 1239 aaPredicted RBP10.26□□□□□ -0.77
USP4-202ENST00000351842 ARHGEF6Q15052 776 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 KIAA0753Q2KHM9 967 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 DUSP28Q4G0W2 176 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 HERC4Q5GLZ8 1057 aaPredicted RBP10.26□□□□□ -0.77
USP4-202ENST00000351842 ENGASEQ8NFI3 743 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 DDX12PQ92771 950 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 BLOC1S4Q9NUP1 217 aa10.26□□□□□ -0.77
USP4-202ENST00000351842 MYMKA6NI61 221 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 H3BRB1 525 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 TBX3O15119 743 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 LGALS2P05162 132 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 CTSHP09668 335 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 SRGAP2CP0DJJ0 459 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 HSPA8P11142 646 aaKnown RBP10.25□□□□□ -0.77
USP4-202ENST00000351842 RPA1P27694 616 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 CLCN3P51790 818 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 DRP2Q13474 957 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 EPHA7Q15375 998 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 ANO5Q75V66 913 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 ATP6V0A1Q93050 837 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 SMARCE1Q969G3 411 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 MBOAT7Q96N66 472 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 TUT1Q9H6E5 874 aaKnown RBP10.25□□□□□ -0.77
USP4-202ENST00000351842 GDAQ9Y2T3 454 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 PLXNA1Q9UIW2 1896 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 LCTP09848 1927 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 SYNGAP1Q96PV0 1343 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 ACTN4O43707 911 aaKnown RBP10.25□□□□□ -0.77
USP4-202ENST00000351842 PSMC5P62195 406 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 PPP2R5CQ13362 524 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 PDIA5Q14554 519 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 TMEM132AQ24JP5 1023 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 XRRA1Q6P2D8 792 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 PADI6Q6TGC4 694 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 MYCT1Q8N699 235 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 USP6NLQ92738 828 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 AK8Q96MA6 479 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 NLRP4Q96MN2 994 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 NOD1Q9Y239 953 aa10.25□□□□□ -0.77
USP4-202ENST00000351842 TBCAO75347 108 aaKnown RBP10.24□□□□□ -0.77
USP4-202ENST00000351842 SLFN14P0C7P3 912 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 HARSP12081 509 aaKnown RBP10.24□□□□□ -0.77
USP4-202ENST00000351842 JAK3P52333 1124 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 GHRHRQ02643 423 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 CDR2LQ86X02 465 aaPredicted RBP10.24□□□□□ -0.77
USP4-202ENST00000351842 RAD54LQ92698 747 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 PCYT2Q99447 389 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 HSD17B14Q9BPX1 270 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 KATNBL1Q9H079 304 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 CLSTN2Q9H4D0 955 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 MYH9P35579 1960 aaKnown RBP10.24□□□□□ -0.77
USP4-202ENST00000351842 TFRCP02786 760 aaKnown RBP10.24□□□□□ -0.77
USP4-202ENST00000351842 HOXC6P09630 235 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 TGFB3P10600 412 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 TBC1D8BQ0IIM8 1120 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 LAMC2Q13753 1193 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 DGKDQ16760 1214 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 SKOR2Q2VWA4 1001 aaPredicted RBP10.24□□□□□ -0.77
USP4-202ENST00000351842 BRDTQ58F21 947 aaPredicted RBP10.24□□□□□ -0.77
USP4-202ENST00000351842 ZNF746Q6NUN9 644 aaPredicted RBP10.24□□□□□ -0.77
USP4-202ENST00000351842 MAMDC4Q6UXC1 1216 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 ABHD15Q6UXT9 468 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 HPSEQ9Y251 543 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 KAT6AQ92794 2004 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 FRMPD4Q14CM0 1322 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 SYNRGQ9UMZ2 1314 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 MAFGO15525 162 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 SEPT4O43236 478 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 CLSTN1O94985 981 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 FAM13AO94988 1023 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 ASGR1P07306 291 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 MMP3P08254 477 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 CYBAP13498 195 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 INSRRP14616 1297 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 ATP4AP20648 1035 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms