RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 XRCC4Q13426 336 aa17.37■□□□□ 0.37
HMGA1-202ENST00000347617 DLGAP5Q15398 846 aa17.37■□□□□ 0.37
HMGA1-202ENST00000347617 MEI1Q5TIA1 1274 aa17.37■□□□□ 0.37
HMGA1-202ENST00000347617 RRAGAQ7L523 313 aa17.37■□□□□ 0.37
HMGA1-202ENST00000347617 SH3BP5LQ7L8J4 393 aa17.37■□□□□ 0.37
HMGA1-202ENST00000347617 CACNA2D4Q7Z3S7 1137 aa17.37■□□□□ 0.37
HMGA1-202ENST00000347617 CACNA2D3Q8IZS8 1091 aa17.37■□□□□ 0.37
HMGA1-202ENST00000347617 BAP1Q92560 729 aa17.37■□□□□ 0.37
HMGA1-202ENST00000347617 INPP4AQ96PE3 977 aaPredicted RBP17.37■□□□□ 0.37
HMGA1-202ENST00000347617 RIOX1Q9H6W3 641 aa17.37■□□□□ 0.37
HMGA1-202ENST00000347617 TDRD3Q9H7E2 651 aaKnown RBP17.37■□□□□ 0.37
HMGA1-202ENST00000347617 KANSL2Q9H9L4 492 aa17.37■□□□□ 0.37
HMGA1-202ENST00000347617 CD248Q9HCU0 757 aa17.37■□□□□ 0.37
HMGA1-202ENST00000347617 CEP72Q9P209 647 aa17.37■□□□□ 0.37
HMGA1-202ENST00000347617 NYAP2Q9P242 653 aa17.37■□□□□ 0.37
HMGA1-202ENST00000347617 HERC5Q9UII4 1024 aaKnown RBP17.37■□□□□ 0.37
HMGA1-202ENST00000347617 DDTLA6NHG4 134 aaPredicted RBP17.36■□□□□ 0.37
HMGA1-202ENST00000347617 LRRC53A6NM62 1247 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 BHMG1C9JSJ3 638 aaPredicted RBP17.36■□□□□ 0.37
HMGA1-202ENST00000347617 M0R2N6 131 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 CYTH3O43739 400 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 FAM153BP0C7A2 387 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 PDHBP11177 359 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 CXCR5P32302 372 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 TNIP1Q15025 636 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 FAM153CQ494X1 144 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 ANKRD20A8PQ5CZ79 823 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 CYB5D1Q6P9G0 228 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 FMNL3Q8IVF7 1028 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 FUKQ8N0W3 1084 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 GUF1Q8N442 669 aaKnown RBP17.36■□□□□ 0.37
HMGA1-202ENST00000347617 CENPTQ96BT3 561 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 MIEF2Q96C03 454 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 MTMR8Q96EF0 704 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 TSG101Q99816 390 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 MMRN2Q9H8L6 949 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 RIC8AQ9NPQ8 531 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 BARHL2Q9NY43 387 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 FAM153AQ9UHL3 310 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 SLC12A6Q9UHW9 1150 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 TMEM59LQ9UK28 342 aa17.36■□□□□ 0.37
HMGA1-202ENST00000347617 COL4A5P29400 1685 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 NCK2O43639 380 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 RAD17O75943 681 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 PPP2R2AP63151 447 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 PSMD2Q13200 908 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 CERKLQ49MI3 558 aaPredicted RBP17.35■□□□□ 0.37
HMGA1-202ENST00000347617 GPATCH4Q5T3I0 446 aaKnown RBP17.35■□□□□ 0.37
HMGA1-202ENST00000347617 USP38Q8NB14 1042 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 FAM151AQ8WW52 585 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 JDP2Q8WYK2 163 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 KRT12Q99456 494 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 DNAJC18Q9H819 358 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 STK17AQ9UEE5 414 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 PCDHAC2Q9Y5I4 1007 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 CCDC188H7C350 402 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 GSTA1P08263 222 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 PLCG1P19174 1290 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 RPS12P25398 132 aaKnown RBP17.35■□□□□ 0.37
HMGA1-202ENST00000347617 RASSF7Q02833 373 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 CXCL9Q07325 125 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 TCP10Q12799 353 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 SLMAPQ14BN4 828 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 R3HDM1Q15032 1099 aaKnown RBP17.35■□□□□ 0.37
HMGA1-202ENST00000347617 SPDYE2Q495Y8 402 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 CIAPIN1Q6FI81 312 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 FAM83AQ86UY5 434 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 N4BP2L2Q92802 583 aaPredicted RBP17.35■□□□□ 0.37
HMGA1-202ENST00000347617 UPF1Q92900 1129 aaKnown RBP eCLIP17.35■□□□□ 0.377e-23■■■■□ 19.4
HMGA1-202ENST00000347617 CALML4Q96GE6 196 aa17.35■□□□□ 0.37
HMGA1-202ENST00000347617 ZBED3Q96IU2 234 aaPredicted RBP17.35■□□□□ 0.37
HMGA1-202ENST00000347617 DDX20Q9UHI6 824 aaKnown RBP17.35■□□□□ 0.37
HMGA1-202ENST00000347617 SIPA1L1O43166 1804 aa17.34■□□□□ 0.37
HMGA1-202ENST00000347617 GUCY2FP51841 1108 aa17.34■□□□□ 0.37
HMGA1-202ENST00000347617 SEC24CP53992 1094 aa17.34■□□□□ 0.37
HMGA1-202ENST00000347617 SLC8A3P57103 927 aa17.34■□□□□ 0.37
HMGA1-202ENST00000347617 STK4Q13043 487 aa17.34■□□□□ 0.37
HMGA1-202ENST00000347617 SLC35G1Q2M3R5 365 aa17.34■□□□□ 0.37
HMGA1-202ENST00000347617 GKAP1Q5VSY0 366 aaPredicted RBP17.34■□□□□ 0.37
HMGA1-202ENST00000347617 SFMBT2Q5VUG0 894 aa17.34■□□□□ 0.37
HMGA1-202ENST00000347617 HGSNATQ68CP4 663 aa17.34■□□□□ 0.37
HMGA1-202ENST00000347617 TMEM179Q6ZVK1 233 aa17.34■□□□□ 0.37
HMGA1-202ENST00000347617 UNC13DQ70J99 1090 aa17.34■□□□□ 0.37
HMGA1-202ENST00000347617 CCHCR1Q8TD31 782 aa17.34■□□□□ 0.37
HMGA1-202ENST00000347617 SEC16BQ96JE7 1060 aa17.34■□□□□ 0.37
HMGA1-202ENST00000347617 FAM207AQ9NSI2 230 aaPredicted RBP17.34■□□□□ 0.37
HMGA1-202ENST00000347617 ZNF70Q9UC06 446 aaPredicted RBP17.34■□□□□ 0.37
HMGA1-202ENST00000347617 MYH4Q9Y623 1939 aa17.34■□□□□ 0.37
HMGA1-202ENST00000347617 H0YGN5 161 aa17.33■□□□□ 0.37
HMGA1-202ENST00000347617 TBC1D12O60347 775 aa17.33■□□□□ 0.37
HMGA1-202ENST00000347617 OR52Z1P0C646 297 aa17.33■□□□□ 0.37
HMGA1-202ENST00000347617 HSD17B3P37058 310 aa17.33■□□□□ 0.37
HMGA1-202ENST00000347617 EIF3BP55884 814 aaKnown RBP17.33■□□□□ 0.37
HMGA1-202ENST00000347617 USP17L2Q6R6M4 530 aa17.33■□□□□ 0.37
HMGA1-202ENST00000347617 KRT25Q7Z3Z0 450 aa17.33■□□□□ 0.37
HMGA1-202ENST00000347617 ACTRT1Q8TDG2 376 aa17.33■□□□□ 0.37
HMGA1-202ENST00000347617 TATDN2Q93075 761 aa17.33■□□□□ 0.37
HMGA1-202ENST00000347617 ZMYND12Q9H0C1 365 aa17.33■□□□□ 0.37
HMGA1-202ENST00000347617 SEMA6BQ9H3T3 888 aa17.33■□□□□ 0.37
HMGA1-202ENST00000347617 EHD2Q9NZN4 543 aa17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms