RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 ABCB11O95342 1321 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 ACEP12821 1306 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 PRR36Q9H6K5 1346 aa8.85□□□□□ -0.99
ATG4A-201ENST00000343524 LAMB4A4D0S4 1761 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 BTBD18B2RXH4 712 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 BHMG1C9JSJ3 638 aaPredicted RBP8.84□□□□□ -0.99
ATG4A-201ENST00000343524 F8VZ95 297 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 M0R2C6 588 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 SNX3O60493 162 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 TMCC1O94876 653 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 RPN1P04843 607 aaKnown RBP8.84□□□□□ -0.99
ATG4A-201ENST00000343524 IFIT1P09914 478 aaKnown RBP8.84□□□□□ -0.99
ATG4A-201ENST00000343524 NUDT17P0C025 328 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 CCDC166P0CW27 439 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 CHN1P15882 459 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 CXCR5P32302 372 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 RFX5P48382 616 aaPredicted RBP8.84□□□□□ -0.99
ATG4A-201ENST00000343524 POLE2P56282 527 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 CYP27A1Q02318 531 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 PTPN12Q05209 780 aaKnown RBP8.84□□□□□ -0.99
ATG4A-201ENST00000343524 DEUP1Q05D60 604 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 MYBPC3Q14896 1274 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 MUM1Q2TAK8 710 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 WASHC2DQ5SRD0 308 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 ASRGL1Q7L266 308 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 TMC3Q7Z5M5 1100 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 CCDC84Q86UT8 332 aaPredicted RBP8.84□□□□□ -0.99
ATG4A-201ENST00000343524 ADSSL1Q8N142 457 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 SMC1BQ8NDV3 1235 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 APPBP2Q92624 585 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 LTV1Q96GA3 475 aaPredicted RBP8.84□□□□□ -0.99
ATG4A-201ENST00000343524 DHTKD1Q96HY7 919 aaPredicted RBP8.84□□□□□ -0.99
ATG4A-201ENST00000343524 GBP5Q96PP8 586 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 ELAC2Q9BQ52 826 aaKnown RBP8.84□□□□□ -0.99
ATG4A-201ENST00000343524 HINFPQ9BQA5 517 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 SELENOSQ9BQE4 189 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 TUBGCP2Q9BSJ2 902 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 DNAAF2Q9NVR5 837 aaKnown RBP8.84□□□□□ -0.99
ATG4A-201ENST00000343524 VPS54Q9P1Q0 977 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 STOML1Q9UBI4 398 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 TMEM59LQ9UK28 342 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 FBXL5Q9UKA1 691 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 ARL2BPQ9Y2Y0 163 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 DUSP10Q9Y6W6 482 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 PCNTO95613 3336 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 XDHP47989 1333 aa8.84□□□□□ -0.99
ATG4A-201ENST00000343524 SPDYE5A6NIY4 337 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 BTBD11A6QL63 1104 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 KRT16P08779 473 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 CDC25CP30307 473 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 HOXA7P31268 230 aaPredicted RBP8.84□□□□□ -1
ATG4A-201ENST00000343524 RASSF2P50749 326 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 RAD23BP54727 409 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 ERVK-9P63128 1117 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 PPP2R5BQ15173 497 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 DIXDC1Q155Q3 683 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 CLUL1Q15846 466 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 GSTA3Q16772 222 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 CCDC178Q5BJE1 867 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 DZIP3Q86Y13 1208 aaKnown RBP8.84□□□□□ -1
ATG4A-201ENST00000343524 ZSCAN29Q8IWY8 852 aaPredicted RBP8.84□□□□□ -1
ATG4A-201ENST00000343524 LRRC34Q8IZ02 419 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 RBBP8NLQ8NC74 664 aaPredicted RBP8.84□□□□□ -1
ATG4A-201ENST00000343524 INPP5DQ92835 1189 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 IFT43Q96FT9 208 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 MTA3Q9BTC8 594 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 SLC4A5Q9BY07 1137 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 DDX21Q9NR30 783 aaKnown RBP eCLIP8.84□□□□□ -1
ATG4A-201ENST00000343524 ITGB1BP2Q9UKP3 347 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 AGAP1Q9UPQ3 857 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 STK38LQ9Y2H1 464 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 SLC12A7Q9Y666 1083 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 MYH7P12883 1935 aa8.84□□□□□ -1
ATG4A-201ENST00000343524 BTAF1O14981 1849 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 TIAM2Q8IVF5 1701 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 MAGEA13PA6NCF6 341 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 ZSCAN5CA6NGD5 496 aaPredicted RBP8.83□□□□□ -1
ATG4A-201ENST00000343524 NEURL1BA8MQ27 555 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 RBAK-RBAKDNI3L0D1 243 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 ZNF263O14978 683 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 RANBP6O60518 1105 aaKnown RBP8.83□□□□□ -1
ATG4A-201ENST00000343524 HNRNPCL1O60812 293 aaKnown RBP8.83□□□□□ -1
ATG4A-201ENST00000343524 GJB6O95452 261 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 FGAP02671 866 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 ATP5DP30049 168 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 ECHS1P30084 290 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 PEX5P50542 639 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 HAND2P61296 217 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 MRPS25P82663 173 aaKnown RBP8.83□□□□□ -1
ATG4A-201ENST00000343524 GCKRQ14397 625 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 KPNB1Q14974 876 aaKnown RBP8.83□□□□□ -1
ATG4A-201ENST00000343524 MEI1Q5TIA1 1274 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 TYW1BQ6NUM6 668 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 BTNL9Q6UXG8 535 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 RIC3Q7Z5B4 369 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 COL23A1Q86Y22 540 aaPredicted RBP8.83□□□□□ -1
ATG4A-201ENST00000343524 SPICE1Q8N0Z3 855 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 STAG2Q8N3U4 1231 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 STKLD1Q8NE28 680 aa8.83□□□□□ -1
ATG4A-201ENST00000343524 NEK9Q8TD19 979 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms