RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 FILIP1Q7Z7B0 1213 aa17.15■□□□□ 0.34
LIMS1-202ENST00000338045 SFR1Q86XK3 245 aa17.15■□□□□ 0.34
LIMS1-202ENST00000338045 MORC4Q8TE76 937 aa17.15■□□□□ 0.34
LIMS1-202ENST00000338045 SCFD1Q8WVM8 642 aa17.15■□□□□ 0.34
LIMS1-202ENST00000338045 ZNF830Q96NB3 372 aaPredicted RBP17.15■□□□□ 0.34
LIMS1-202ENST00000338045 PARK7Q99497 189 aaKnown RBP17.15■□□□□ 0.34
LIMS1-202ENST00000338045 MPHOSPH6Q99547 160 aaKnown RBP17.15■□□□□ 0.34
LIMS1-202ENST00000338045 BCAS3Q9H6U6 928 aa17.15■□□□□ 0.34
LIMS1-202ENST00000338045 KIF20AO95235 890 aa17.14■□□□□ 0.33
LIMS1-202ENST00000338045 TGFB3P10600 412 aa17.14■□□□□ 0.33
LIMS1-202ENST00000338045 EEF1GP26641 437 aaKnown RBP17.14■□□□□ 0.33
LIMS1-202ENST00000338045 YWHABP31946 246 aaKnown RBP17.14■□□□□ 0.33
LIMS1-202ENST00000338045 GSDMDP57764 484 aa17.14■□□□□ 0.33
LIMS1-202ENST00000338045 TMC6Q7Z403 805 aa17.14■□□□□ 0.33
LIMS1-202ENST00000338045 ANKRD13CQ8N6S4 541 aa17.14■□□□□ 0.33
LIMS1-202ENST00000338045 TBC1D7Q9P0N9 293 aa17.14■□□□□ 0.33
LIMS1-202ENST00000338045 ACTR2P61160 394 aa17.14■□□□□ 0.33
LIMS1-202ENST00000338045 ABHD15Q6UXT9 468 aa17.14■□□□□ 0.33
LIMS1-202ENST00000338045 SEPT14Q6ZU15 432 aa17.14■□□□□ 0.33
LIMS1-202ENST00000338045 RASAL3Q86YV0 1011 aa17.14■□□□□ 0.33
LIMS1-202ENST00000338045 ABRAQ8N0Z2 381 aa17.14■□□□□ 0.33
LIMS1-202ENST00000338045 ANKRD20A12PQ8NF67 263 aa17.14■□□□□ 0.33
LIMS1-202ENST00000338045 ZHX3Q9H4I2 956 aa17.14■□□□□ 0.33
LIMS1-202ENST00000338045 ANKEF1Q9NU02 776 aa17.14■□□□□ 0.33
LIMS1-202ENST00000338045 SEL1LQ9UBV2 794 aa17.14■□□□□ 0.33
LIMS1-202ENST00000338045 PASKQ96RG2 1323 aa17.13■□□□□ 0.33
LIMS1-202ENST00000338045 DKC1O60832 514 aaKnown RBP eCLIP17.13■□□□□ 0.33
LIMS1-202ENST00000338045 ATG7O95352 703 aa17.13■□□□□ 0.33
LIMS1-202ENST00000338045 PSAPP07602 524 aa17.13■□□□□ 0.33
LIMS1-202ENST00000338045 PBX1P40424 430 aa17.13■□□□□ 0.33
LIMS1-202ENST00000338045 COPB1P53618 953 aaKnown RBP17.13■□□□□ 0.33
LIMS1-202ENST00000338045 BMT2Q1RMZ1 405 aa17.13■□□□□ 0.33
LIMS1-202ENST00000338045 FILIP1LQ4L180 1135 aa17.13■□□□□ 0.33
LIMS1-202ENST00000338045 PADI6Q6TGC4 694 aa17.13■□□□□ 0.33
LIMS1-202ENST00000338045 SAPCD2Q86UD0 394 aa17.13■□□□□ 0.33
LIMS1-202ENST00000338045 CACTINQ8WUQ7 758 aaKnown RBP17.13■□□□□ 0.33
LIMS1-202ENST00000338045 KCTD10Q9H3F6 313 aa17.13■□□□□ 0.33
LIMS1-202ENST00000338045 PARVGQ9HBI0 331 aa17.13■□□□□ 0.33
LIMS1-202ENST00000338045 FAM13AO94988 1023 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 UBA1P22314 1058 aaKnown RBP17.12■□□□□ 0.33
LIMS1-202ENST00000338045 CASP5P51878 434 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 MAPK7Q13164 816 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 FAM110CQ1W6H9 321 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 WDR78Q5VTH9 848 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 FAM114A1Q8IWE2 563 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 LRRC8AQ8IWT6 810 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 ATP6V0A1Q93050 837 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 FIZ1Q96SL8 496 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 ZCCHC17Q9NP64 241 aaKnown RBP17.12■□□□□ 0.33
LIMS1-202ENST00000338045 TELO2Q9Y4R8 837 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 ZNFX1Q9P2E3 1918 aaKnown RBP17.12■□□□□ 0.33
LIMS1-202ENST00000338045 TEX33O43247 280 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 STRNO43815 780 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 ZNF862O60290 1169 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 STBD1O95210 358 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 MSNP26038 577 aaKnown RBP17.12■□□□□ 0.33
LIMS1-202ENST00000338045 TBX2Q13207 712 aaPredicted RBP17.12■□□□□ 0.33
LIMS1-202ENST00000338045 SPECC1LQ69YQ0 1117 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 MIS18BP1Q6P0N0 1132 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 KCNV1Q6PIU1 500 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 LRRC55Q6ZSA7 311 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 DAW1Q8N136 415 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 TSG101Q99816 390 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 TIPINQ9BVW5 301 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 GABBR1Q9UBS5 961 aa17.12■□□□□ 0.33
LIMS1-202ENST00000338045 WDR81Q562E7 1941 aa17.11■□□□□ 0.33
LIMS1-202ENST00000338045 DOCK5Q9H7D0 1870 aa17.11■□□□□ 0.33
LIMS1-202ENST00000338045 SYNGAP1Q96PV0 1343 aa17.11■□□□□ 0.33
LIMS1-202ENST00000338045 MANSC4A6NHS7 340 aaPredicted RBP17.11■□□□□ 0.33
LIMS1-202ENST00000338045 FARP2O94887 1054 aaPredicted RBP17.11■□□□□ 0.33
LIMS1-202ENST00000338045 FGFR1OPO95684 399 aaKnown RBP17.11■□□□□ 0.33
LIMS1-202ENST00000338045 SUPT20HL2P0C7V6 817 aa17.11■□□□□ 0.33
LIMS1-202ENST00000338045 ZNF157P51786 506 aaPredicted RBP17.11■□□□□ 0.33
LIMS1-202ENST00000338045 NEDD9Q14511 834 aa17.11■□□□□ 0.33
LIMS1-202ENST00000338045 ARID5BQ14865 1188 aa17.11■□□□□ 0.33
LIMS1-202ENST00000338045 ZNF792Q3KQV3 632 aa17.11■□□□□ 0.33
LIMS1-202ENST00000338045 PPP4R3CPQ6ZMV5 832 aa17.11■□□□□ 0.33
LIMS1-202ENST00000338045 CYFIP1Q7L576 1253 aa17.11■□□□□ 0.33
LIMS1-202ENST00000338045 CCDC60Q8IWA6 550 aaPredicted RBP17.11■□□□□ 0.33
LIMS1-202ENST00000338045 ZC3H3Q8IXZ2 948 aaKnown RBP17.11■□□□□ 0.33
LIMS1-202ENST00000338045 ZNF507Q8TCN5 953 aa17.11■□□□□ 0.33
LIMS1-202ENST00000338045 MRPL44Q9H9J2 332 aaKnown RBP17.11■□□□□ 0.33
LIMS1-202ENST00000338045 RRAGDQ9NQL2 400 aaPredicted RBP17.11■□□□□ 0.33
LIMS1-202ENST00000338045 TAB2Q9NYJ8 693 aa17.11■□□□□ 0.33
LIMS1-202ENST00000338045 MAGEC2Q9UBF1 373 aaPredicted RBP17.11■□□□□ 0.33
LIMS1-202ENST00000338045 IGSF9BQ9UPX0 1349 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 IGKV6D-21A0A0A0MT36 114 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 ASB14A6NK59 587 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 SFI1A8K8P3 1242 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 N4BP3O15049 544 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 EIF3DO15371 548 aaKnown RBP eCLIP17.1■□□□□ 0.33
LIMS1-202ENST00000338045 HIP1RO75146 1068 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 MYBP10242 640 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 LRMPQ12912 555 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 SWSAP1Q6NVH7 229 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 RGMBQ6NW40 437 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 ANO5Q75V66 913 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 MYCT1Q8N699 235 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 CCDC150Q8NCX0 1101 aa17.1■□□□□ 0.33
LIMS1-202ENST00000338045 CNOT6LQ96LI5 555 aaKnown RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms