RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 SERINC5Q86VE9 423 aa17.85■□□□□ 0.45
CCDC28A-201ENST00000332797 BBXQ8WY36 941 aaPredicted RBP17.85■□□□□ 0.45
CCDC28A-201ENST00000332797 WNT8BQ93098 351 aa17.85■□□□□ 0.45
CCDC28A-201ENST00000332797 ZBTB10Q96DT7 871 aa17.85■□□□□ 0.45
CCDC28A-201ENST00000332797 TRIP12Q14669 1992 aaPredicted RBP17.85■□□□□ 0.45
CCDC28A-201ENST00000332797 COL1A2P08123 1366 aa17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 LAD1O00515 517 aa17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 P4HBP07237 508 aaKnown RBP17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 QARSP47897 775 aaKnown RBP17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 CYP4A11Q02928 519 aa17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 ZNF484Q5JVG2 852 aa17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 MARCH8Q5T0T0 291 aa17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 MFSD5Q6N075 450 aa17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 FAM173BQ6P4H8 233 aa17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 RETREG2Q8NC44 543 aa17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 CAGE1Q8TC20 777 aa17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 DYDC2Q96IM9 177 aa17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 EIF2AK1Q9BQI3 630 aaKnown RBP17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 LXNQ9BS40 222 aa17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 WNT8AQ9H1J5 351 aa17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 ZSCAN16Q9H4T2 348 aaPredicted RBP17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 NRBP2Q9NSY0 501 aa17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 RGL1Q9NZL6 768 aa17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 SEPT9Q9UHD8 586 aaPredicted RBP17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 KAT6AQ92794 2004 aa17.84■□□□□ 0.45
CCDC28A-201ENST00000332797 PITPNM1O00562 1244 aa17.83■□□□□ 0.45
CCDC28A-201ENST00000332797 PDIA4P13667 645 aaKnown RBP17.83■□□□□ 0.45
CCDC28A-201ENST00000332797 FPGSQ05932 587 aa17.83■□□□□ 0.45
CCDC28A-201ENST00000332797 CTTNQ14247 550 aaKnown RBP17.83■□□□□ 0.45
CCDC28A-201ENST00000332797 CHRDL2Q6WN34 429 aa17.83■□□□□ 0.45
CCDC28A-201ENST00000332797 RUFY4Q6ZNE9 571 aa17.83■□□□□ 0.45
CCDC28A-201ENST00000332797 SCLYQ96I15 445 aa17.83■□□□□ 0.45
CCDC28A-201ENST00000332797 MBLAC1A4D2B0 266 aaPredicted RBP17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 ZBTB42B2RXF5 422 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 DKC1O60832 514 aaKnown RBP eCLIP17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 ZSCAN22P10073 491 aaPredicted RBP17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 CKBP12277 381 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 THPOP40225 353 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 PRPHP41219 470 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 FXR2P51116 673 aaKnown RBP eCLIP17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 ATP2C1P98194 919 aaPredicted RBP17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 PKP1Q13835 747 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 TRIM71Q2Q1W2 868 aaKnown RBP17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 XKR3Q5GH77 459 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 TPH2Q8IWU9 490 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 TMEM199Q8N511 208 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 GDF15Q99988 308 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 WRAP73Q9P2S5 460 aaPredicted RBP17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 CEP131Q9UPN4 1083 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 TANC1Q9C0D5 1861 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 TMEM150BA6NC51 233 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 DDX11L8A8MPP1 907 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 CSF2RAP15509 400 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 RBL2Q08999 1139 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 SF3A1Q15459 793 aaKnown RBP17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 TAF2Q6P1X5 1199 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 MTHFD1LQ6UB35 978 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 DTHD1Q6ZMT9 781 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 ERMNQ8TAM6 284 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 NEK9Q8TD19 979 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 RAB34Q9BZG1 259 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 FTOQ9C0B1 505 aaKnown RBP eCLIP17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 UBE2OQ9C0C9 1292 aaKnown RBP17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 ZSWIM4Q9H7M6 989 aa17.82■□□□□ 0.44
CCDC28A-201ENST00000332797 SLITRK3O94933 977 aa17.81■□□□□ 0.44
CCDC28A-201ENST00000332797 STBD1O95210 358 aa17.81■□□□□ 0.44
CCDC28A-201ENST00000332797 BMP15O95972 392 aa17.81■□□□□ 0.44
CCDC28A-201ENST00000332797 F13A1P00488 732 aa17.81■□□□□ 0.44
CCDC28A-201ENST00000332797 CTSHP09668 335 aa17.81■□□□□ 0.44
CCDC28A-201ENST00000332797 SELPP16109 830 aa17.81■□□□□ 0.44
CCDC28A-201ENST00000332797 KLRC1P26715 233 aa17.81■□□□□ 0.44
CCDC28A-201ENST00000332797 PPIGQ13427 754 aaKnown RBP eCLIP17.81■□□□□ 0.44
CCDC28A-201ENST00000332797 IL17AQ16552 155 aa17.81■□□□□ 0.44
CCDC28A-201ENST00000332797 MTERF2Q49AM1 385 aa17.81■□□□□ 0.44
CCDC28A-201ENST00000332797 ZNF618Q5T7W0 954 aa17.81■□□□□ 0.44
CCDC28A-201ENST00000332797 PLA2G4FQ68DD2 849 aa17.81■□□□□ 0.44
CCDC28A-201ENST00000332797 LRRC8DQ7L1W4 858 aa17.81■□□□□ 0.44
CCDC28A-201ENST00000332797 HSD17B14Q9BPX1 270 aa17.81■□□□□ 0.44
CCDC28A-201ENST00000332797 SH2D3AQ9BRG2 576 aa17.81■□□□□ 0.44
CCDC28A-201ENST00000332797 FAM49AQ9H0Q0 323 aaPredicted RBP17.81■□□□□ 0.44
CCDC28A-201ENST00000332797 LRWD1Q9UFC0 647 aa17.81■□□□□ 0.44
CCDC28A-201ENST00000332797 CLIC4Q9Y696 253 aa17.81■□□□□ 0.44
CCDC28A-201ENST00000332797 VWA3AA6NCI4 1184 aa17.8■□□□□ 0.44
CCDC28A-201ENST00000332797 C22orf31O95567 290 aa17.8■□□□□ 0.44
CCDC28A-201ENST00000332797 IQCF3P0C7M6 154 aa17.8■□□□□ 0.44
CCDC28A-201ENST00000332797 CEBPZQ03701 1054 aaKnown RBP17.8■□□□□ 0.44
CCDC28A-201ENST00000332797 ANO5Q75V66 913 aa17.8■□□□□ 0.44
CCDC28A-201ENST00000332797 RSPH3Q86UC2 560 aa17.8■□□□□ 0.44
CCDC28A-201ENST00000332797 C4orf19Q8IY42 314 aa17.8■□□□□ 0.44
CCDC28A-201ENST00000332797 IGSF22Q8N9C0 903 aa17.8■□□□□ 0.44
CCDC28A-201ENST00000332797 DNAJB3Q8WWF6 145 aa17.8■□□□□ 0.44
CCDC28A-201ENST00000332797 NIFKQ9BYG3 293 aaKnown RBP17.8■□□□□ 0.44
CCDC28A-201ENST00000332797 PCDHA2Q9Y5H9 948 aa17.8■□□□□ 0.44
CCDC28A-201ENST00000332797 MYH15Q9Y2K3 1946 aa17.79■□□□□ 0.44
CCDC28A-201ENST00000332797 MED24O75448 989 aa17.79■□□□□ 0.44
CCDC28A-201ENST00000332797 YWHABP31946 246 aaKnown RBP17.79■□□□□ 0.44
CCDC28A-201ENST00000332797 EPHB4P54760 987 aa17.79■□□□□ 0.44
CCDC28A-201ENST00000332797 PDIA5Q14554 519 aa17.79■□□□□ 0.44
CCDC28A-201ENST00000332797 FOXD4L6Q3SYB3 417 aaPredicted RBP17.79■□□□□ 0.44
CCDC28A-201ENST00000332797 ARL6IP4Q66PJ3 421 aaKnown RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms