RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 CCT8L2Q96SF2 557 aa9.36□□□□□ -0.91
USF3-201ENST00000316407 MYH3P11055 1940 aa9.36□□□□□ -0.91
USF3-201ENST00000316407 LPXNO60711 386 aa9.36□□□□□ -0.91
USF3-201ENST00000316407 N4BP1O75113 896 aaKnown RBP9.36□□□□□ -0.91
USF3-201ENST00000316407 PANX2Q96RD6 677 aa9.36□□□□□ -0.91
USF3-201ENST00000316407 PAX7P23759 505 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 CDO1Q16878 200 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 HNRNPDLO14979 420 aaKnown RBP9.35□□□□□ -0.91
USF3-201ENST00000316407 ZAP70P43403 619 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 YWHAEP62258 255 aaKnown RBP9.35□□□□□ -0.91
USF3-201ENST00000316407 TRIM16LQ309B1 348 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 RABGAP1LQ5R372 815 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 RASGRP4Q8TDF6 673 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 OPTNQ96CV9 577 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 ABHD10Q9NUJ1 306 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 MARCOQ9UEW3 520 aaPredicted RBP9.35□□□□□ -0.91
USF3-201ENST00000316407 AP1B1Q10567 949 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 ODR4Q5SWX8 454 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 SPATA5Q8NB90 893 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 ZSCAN20P17040 1043 aaPredicted RBP9.35□□□□□ -0.91
USF3-201ENST00000316407 ATP1A4Q13733 1029 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 THOC5Q13769 683 aaKnown RBP9.35□□□□□ -0.91
USF3-201ENST00000316407 CCDC144BQ3MJ40 725 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 CASP10Q92851 521 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 TRIM8Q9BZR9 551 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 ANTXR1Q9H6X2 564 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 SLC13A4Q9UKG4 626 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 SNX24Q9Y343 169 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 WDR64B1ANS9 1081 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 NFIBO00712 420 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 PDIK1LQ8N165 341 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 OSBPL9Q96SU4 736 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 MED23Q9ULK4 1368 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 TESPA1A2RU30 521 aaPredicted RBP9.35□□□□□ -0.91
USF3-201ENST00000316407 DEAF1O75398 565 aaPredicted RBP9.35□□□□□ -0.91
USF3-201ENST00000316407 CYLC2Q14093 348 aaPredicted RBP9.35□□□□□ -0.91
USF3-201ENST00000316407 LINC00854A0A1B0GVQ3 168 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 SMAPO00193 183 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 FOSL2P15408 326 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 TCN1P20061 433 aaPredicted RBP9.35□□□□□ -0.91
USF3-201ENST00000316407 STAG2Q8N3U4 1231 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 LRRIQ4A6NIV6 560 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 ANGPT1Q15389 498 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 CCNYL1Q8N7R7 359 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 HOOK2Q96ED9 719 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 TRIM33Q9UPN9 1127 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 IGF2BP3O00425 579 aaKnown RBP eCLIP9.35□□□□□ -0.91
USF3-201ENST00000316407 TMA16Q96EY4 203 aaKnown RBP9.35□□□□□ -0.91
USF3-201ENST00000316407 RTEL1Q9NZ71 1219 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 USP19O94966 1318 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 SRGAP2BP0DMP2 458 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 ATP6V0A1Q93050 837 aa9.35□□□□□ -0.91
USF3-201ENST00000316407 SSH2Q76I76 1423 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 TRIM16O95361 564 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 PPARAQ07869 468 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 SUN2Q9UH99 717 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 PASD1Q8IV76 773 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 DHX40Q8IX18 779 aaKnown RBP9.34□□□□□ -0.91
USF3-201ENST00000316407 ZNF274Q96GC6 653 aaPredicted RBP9.34□□□□□ -0.91
USF3-201ENST00000316407 NLRP3Q96P20 1036 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 SNX25Q9H3E2 840 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 FBXL5Q9UKA1 691 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 CDV3Q9UKY7 258 aaKnown RBP9.34□□□□□ -0.91
USF3-201ENST00000316407 COPG1Q9Y678 874 aaKnown RBP9.34□□□□□ -0.91
USF3-201ENST00000316407 PRAG1Q86YV5 1406 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 SSTR3P32745 418 aaPredicted RBP9.34□□□□□ -0.91
USF3-201ENST00000316407 SUGCTQ9HAC7 445 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 ARHGEF10LQ9HCE6 1279 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 AGRPO00253 132 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 PMS2P54278 862 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 ZNF211Q13398 564 aaPredicted RBP9.34□□□□□ -0.91
USF3-201ENST00000316407 TEX13AQ9BXU3 409 aaPredicted RBP9.34□□□□□ -0.91
USF3-201ENST00000316407 PICK1Q9NRD5 415 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 SERPINB2P05120 415 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 PYGLP06737 847 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 HADHAP40939 763 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 DSG1Q02413 1049 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 EFTUD2Q15029 972 aaKnown RBP eCLIP9.34□□□□□ -0.91
USF3-201ENST00000316407 ACAD11Q709F0 780 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 LRRC47Q8N1G4 583 aaKnown RBP9.34□□□□□ -0.91
USF3-201ENST00000316407 NMD3Q96D46 503 aaKnown RBP9.34□□□□□ -0.91
USF3-201ENST00000316407 PCIF1Q9H4Z3 704 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 NOC2LQ9Y3T9 749 aaKnown RBP9.34□□□□□ -0.91
USF3-201ENST00000316407 SNAPC4Q5SXM2 1469 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 TNNC2P02585 160 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 OR52Z1P0C646 297 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 SCARA5Q6ZMJ2 495 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 HDDC2Q7Z4H3 204 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 GEMIN8Q9NWZ8 242 aaKnown RBP9.34□□□□□ -0.91
USF3-201ENST00000316407 TMC5Q6UXY8 1006 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 RFWD2Q8NHY2 731 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 PTK2Q05397 1052 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 GPS1Q13098 491 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 H0Y626 953 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 PFDN6O15212 129 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 UBXN2AP68543 259 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 AGBL1Q96MI9 1066 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 LZTS2Q9BRK4 669 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 E2F8A0AVK6 867 aa9.34□□□□□ -0.91
USF3-201ENST00000316407 AKAP10O43572 662 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms