RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 TEX2Q8IWB9 1127 aa13.59□□□□□ -0.23
SCFD1-201ENST00000311943 CKAP2LQ8IYA6 745 aa13.59□□□□□ -0.23
SCFD1-201ENST00000311943 FOXD4L4Q8WXT5 416 aaPredicted RBP13.59□□□□□ -0.23
SCFD1-201ENST00000311943 RIT2Q99578 217 aa13.59□□□□□ -0.23
SCFD1-201ENST00000311943 BRMS1Q9HCU9 246 aa13.59□□□□□ -0.23
SCFD1-201ENST00000311943 SIP14410 1827 aa13.59□□□□□ -0.23
SCFD1-201ENST00000311943 U2AF2P26368 475 aaKnown RBP eCLIP13.59□□□□□ -0.232e-8■■■■□ 20.1
SCFD1-201ENST00000311943 CDC25AP30304 524 aa13.59□□□□□ -0.23
SCFD1-201ENST00000311943 PTPN11Q06124 597 aaPredicted RBP13.59□□□□□ -0.23
SCFD1-201ENST00000311943 IL17AQ16552 155 aa13.59□□□□□ -0.23
SCFD1-201ENST00000311943 MIS18BP1Q6P0N0 1132 aa13.59□□□□□ -0.23
SCFD1-201ENST00000311943 Q7L0L9 218 aa13.59□□□□□ -0.23
SCFD1-201ENST00000311943 LRRC8DQ7L1W4 858 aa13.59□□□□□ -0.23
SCFD1-201ENST00000311943 MIER3Q7Z3K6 550 aa13.59□□□□□ -0.23
SCFD1-201ENST00000311943 MTMR9Q96QG7 549 aa13.59□□□□□ -0.23
SCFD1-201ENST00000311943 FOXP1Q9H334 677 aaPredicted RBP13.59□□□□□ -0.23
SCFD1-201ENST00000311943 TUBE1Q9UJT0 475 aa13.59□□□□□ -0.23
SCFD1-201ENST00000311943 CHRNA1P02708 482 aa13.58□□□□□ -0.24
SCFD1-201ENST00000311943 KLRC1P26715 233 aa13.58□□□□□ -0.24
SCFD1-201ENST00000311943 PBX2P40425 430 aa13.58□□□□□ -0.24
SCFD1-201ENST00000311943 MCM2P49736 904 aa13.58□□□□□ -0.24
SCFD1-201ENST00000311943 KRT76Q01546 638 aa13.58□□□□□ -0.24
SCFD1-201ENST00000311943 PRKCEQ02156 737 aa13.58□□□□□ -0.24
SCFD1-201ENST00000311943 PTK7Q13308 1070 aa13.58□□□□□ -0.24
SCFD1-201ENST00000311943 PKP1Q13835 747 aa13.58□□□□□ -0.24
SCFD1-201ENST00000311943 MOXD1Q6UVY6 613 aa13.58□□□□□ -0.24
SCFD1-201ENST00000311943 PLPPR4Q7Z2D5 763 aa13.58□□□□□ -0.24
SCFD1-201ENST00000311943 LRRC71Q8N4P6 559 aa13.58□□□□□ -0.24
SCFD1-201ENST00000311943 TMEM199Q8N511 208 aa13.58□□□□□ -0.24
SCFD1-201ENST00000311943 C4orf32Q8N8J7 132 aa13.58□□□□□ -0.24
SCFD1-201ENST00000311943 CHAMP1Q96JM3 812 aa13.58□□□□□ -0.24
SCFD1-201ENST00000311943 TTC12Q9H892 705 aaPredicted RBP13.58□□□□□ -0.24
SCFD1-201ENST00000311943 PRUNE2Q8WUY3 3088 aa13.58□□□□□ -0.24
SCFD1-201ENST00000311943 IGSF9BQ9UPX0 1349 aa13.58□□□□□ -0.24
SCFD1-201ENST00000311943 PP2D1A8MPX8 630 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 WDR64B1ANS9 1081 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 NEMFO60524 1076 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 PSAPP07602 524 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 MYOGP15173 224 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 NPEPPSP55786 919 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 GNL2Q13823 731 aaKnown RBP13.57□□□□□ -0.24
SCFD1-201ENST00000311943 SAFBQ15424 915 aaKnown RBP eCLIP13.57□□□□□ -0.24
SCFD1-201ENST00000311943 CALCRLQ16602 461 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 TTC38Q5R3I4 469 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 AFAP1L1Q8TED9 768 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 DYDC2Q96IM9 177 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 FAM161BQ96MY7 647 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 NRCAMQ92823 1304 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 KAT6AQ92794 2004 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 VPS37CA5D8V6 355 aaPredicted RBP13.57□□□□□ -0.24
SCFD1-201ENST00000311943 TECP42680 631 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 RABGGTBP53611 331 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 MTHFD1LQ6UB35 978 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 SPRED2Q7Z698 418 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 FAM177A1Q8N128 213 aaPredicted RBP13.57□□□□□ -0.24
SCFD1-201ENST00000311943 ATP8B4Q8TF62 1192 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 RNPC3Q96LT9 517 aaKnown RBP13.57□□□□□ -0.24
SCFD1-201ENST00000311943 IL23AQ9NPF7 189 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 GINS2Q9Y248 185 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 REV3LO60673 3130 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 EVPLQ92817 2033 aa13.57□□□□□ -0.24
SCFD1-201ENST00000311943 TANC1Q9C0D5 1861 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 MBLAC1A4D2B0 266 aaPredicted RBP13.56□□□□□ -0.24
SCFD1-201ENST00000311943 H3BQV1 296 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 MARCH6O60337 910 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 CSDE1O75534 798 aaKnown RBP13.56□□□□□ -0.24
SCFD1-201ENST00000311943 VTNP04004 478 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 SELPP16109 830 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 SYT1P21579 422 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 CLCN3P51790 818 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 ECM1Q16610 540 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 MTERF2Q49AM1 385 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 ANO5Q75V66 913 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 SMAP1Q8IYB5 467 aaPredicted RBP13.56□□□□□ -0.24
SCFD1-201ENST00000311943 TMEM40Q8WWA1 233 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 POLD4Q9HCU8 107 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 PCDHA12Q9UN75 941 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 MYH9P35579 1960 aaKnown RBP13.56□□□□□ -0.24
SCFD1-201ENST00000311943 PITPNM1O00562 1244 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 GRIN1Q05586 938 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 PPP2R5CQ13362 524 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 MKRN4PQ13434 485 aaPredicted RBP13.56□□□□□ -0.24
SCFD1-201ENST00000311943 TMEM266Q2M3C6 531 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 FOXD4L6Q3SYB3 417 aaPredicted RBP13.56□□□□□ -0.24
SCFD1-201ENST00000311943 FOXD4L3Q6VB84 417 aaPredicted RBP13.56□□□□□ -0.24
SCFD1-201ENST00000311943 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.56□□□□□ -0.244e-10■■■■□ 25.5
SCFD1-201ENST00000311943 RETREG2Q8NC44 543 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 DBF4BQ8NFT6 615 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 CEP89Q96ST8 783 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 AGO3Q9H9G7 860 aaKnown RBP13.56□□□□□ -0.24
SCFD1-201ENST00000311943 SEPT9Q9UHD8 586 aaPredicted RBP13.56□□□□□ -0.24
SCFD1-201ENST00000311943 TCEAL9Q9UHQ7 104 aa13.56□□□□□ -0.24
SCFD1-201ENST00000311943 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.56□□□□□ -0.24
SCFD1-201ENST00000311943 ZBBXA8MT70 800 aa13.55□□□□□ -0.24
SCFD1-201ENST00000311943 RSPH10B2B2RC85 870 aa13.55□□□□□ -0.24
SCFD1-201ENST00000311943 SLITRK3O94933 977 aa13.55□□□□□ -0.24
SCFD1-201ENST00000311943 ARHGEF15O94989 841 aa13.55□□□□□ -0.24
SCFD1-201ENST00000311943 C22orf31O95567 290 aa13.55□□□□□ -0.24
SCFD1-201ENST00000311943 FGBP02675 491 aa13.55□□□□□ -0.24
SCFD1-201ENST00000311943 OATP04181 439 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms