RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 NAT9Q9BTE0 207 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 DNAJC12Q9UKB3 198 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 CCPG1Q9ULG6 757 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 CAPN11Q9UMQ6 739 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 CRB1P82279 1406 aa5.63□□□□□ -1.51
SCN1A-201ENST00000303395 BTNL10A8MVZ5 291 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 SPAG7O75391 227 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 DEAF1O75398 565 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-201ENST00000303395 KRT10P13645 584 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 HOXB8P17481 243 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-201ENST00000303395 HSPA2P54652 639 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 FMR1NBQ8N0W7 255 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-201ENST00000303395 PGM2Q96G03 612 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 CEP19Q96LK0 163 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.62□□□□□ -1.513e-8■□□□□ 9.3
SCN1A-201ENST00000303395 DIDO1Q9BTC0 2240 aaKnown RBP5.62□□□□□ -1.51
SCN1A-201ENST00000303395 SPEF2Q9C093 1822 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 TULP2O00295 520 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 OR52Z1P0C646 297 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 HADHAP40939 763 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 BNC1Q01954 994 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 GCKRQ14397 625 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 KBTBD12Q3ZCT8 623 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 C1orf228Q6PIY5 440 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 LDHAL6AQ6ZMR3 332 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 DDX42Q86XP3 938 aaKnown RBP eCLIP5.62□□□□□ -1.51
SCN1A-201ENST00000303395 CTAGE3PQ8IX95 158 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 CCDC105Q8IYK2 499 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 CDHR1Q96JP9 859 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 FBXL5Q9UKA1 691 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 ABCC6O95255 1503 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 PITPNM2Q9BZ72 1349 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 VPS41P49754 854 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 ADCY7P51828 1080 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 NLRP11P59045 1033 aaKnown RBP5.62□□□□□ -1.51
SCN1A-201ENST00000303395 MECOMQ03112 1051 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 PAPD7Q5XG87 772 aaKnown RBP5.62□□□□□ -1.51
SCN1A-201ENST00000303395 JADE1Q6IE81 842 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 CDC37L1Q7L3B6 337 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 C8orf58Q8NAV2 365 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 RBM46Q8TBY0 533 aaKnown RBP5.62□□□□□ -1.51
SCN1A-201ENST00000303395 ATXN2LQ8WWM7 1075 aaKnown RBP5.62□□□□□ -1.51
SCN1A-201ENST00000303395 SYNPO2Q9UMS6 1093 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 PSMA4P25789 261 aaKnown RBP5.62□□□□□ -1.51
SCN1A-201ENST00000303395 NAPAP54920 295 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 GUCY1B3Q02153 619 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 TOM1L2Q6ZVM7 507 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 RSRC2Q7L4I2 434 aaKnown RBP5.62□□□□□ -1.51
SCN1A-201ENST00000303395 ZNF677Q86XU0 584 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 RPRD1BQ9NQG5 326 aaKnown RBP5.62□□□□□ -1.51
SCN1A-201ENST00000303395 SAR1AQ9NR31 198 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 PICK1Q9NRD5 415 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 ZMYM2Q9UBW7 1377 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 TMEM110-MUSTN1A8MSY1 372 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 E7EWF7 191 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 TBX3O15119 743 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 TEX28O15482 410 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 PARP1P09874 1014 aaKnown RBP5.62□□□□□ -1.51
SCN1A-201ENST00000303395 XPAP23025 273 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-201ENST00000303395 BLVRAP53004 296 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 KRT33BQ14525 404 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 PDIA5Q14554 519 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 MAPK6Q16659 721 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 TRMT5Q32P41 509 aaKnown RBP5.62□□□□□ -1.51
SCN1A-201ENST00000303395 NT5DC1Q5TFE4 455 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 TPH2Q8IWU9 490 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 CEP95Q96GE4 821 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 FAR2Q96K12 515 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 WDR11Q9BZH6 1224 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 WNT8AQ9H1J5 351 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 DCLRE1BQ9H816 532 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 LRWD1Q9UFC0 647 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 ENOPH1Q9UHY7 261 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 TMCO1Q9UM00 188 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 PNPLA7Q6ZV29 1317 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 MAP3K13O43283 966 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 MMP1P03956 469 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 PCCAP05165 728 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-201ENST00000303395 ATF2P15336 505 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 SERPINB9P50453 376 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 OCA2Q04671 838 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 CCDC15Q0P6D6 951 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 NAB1Q13506 487 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 CMPK2Q5EBM0 449 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 CASC4Q6P4E1 433 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 NLRP14Q86W24 1093 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 TUBGCP2Q9BSJ2 902 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 ZMYND12Q9H0C1 365 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 TRPC6Q9Y210 931 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 ACEP12821 1306 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 TMEM2Q9UHN6 1383 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 CCT5P48643 541 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 PDE4DQ08499 809 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 KRT80Q6KB66 452 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 IRGCQ6NXR0 463 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 C4orf50Q6ZRC1 276 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 MTO1Q9Y2Z2 717 aaKnown RBP5.62□□□□□ -1.51
SCN1A-201ENST00000303395 ADGRA2Q96PE1 1338 aa5.62□□□□□ -1.51
SCN1A-201ENST00000303395 MAGEA13PA6NCF6 341 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 H3BNX3 289 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms