RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 CYP4F22Q6NT55 531 aa16.66■□□□□ 0.26
SHH-201ENST00000297261 FBXO11Q86XK2 927 aa16.66■□□□□ 0.26
SHH-201ENST00000297261 RUNDC3BQ96NL0 473 aa16.66■□□□□ 0.26
SHH-201ENST00000297261 MLXIPLQ9NP71 852 aa16.66■□□□□ 0.26
SHH-201ENST00000297261 TXNDC16Q9P2K2 825 aa16.66■□□□□ 0.26
SHH-201ENST00000297261 TARSL2A2RTX5 802 aaKnown RBP16.66■□□□□ 0.26
SHH-201ENST00000297261 LRRC53A6NM62 1247 aa16.66■□□□□ 0.26
SHH-201ENST00000297261 LRRIQ3A6PVS8 624 aaPredicted RBP16.66■□□□□ 0.26
SHH-201ENST00000297261 ALKBH5Q6P6C2 394 aaKnown RBP16.66■□□□□ 0.26
SHH-201ENST00000297261 LRRC8CQ8TDW0 803 aa16.66■□□□□ 0.26
SHH-201ENST00000297261 GPR75-ASB3A0A0A6YYF3 556 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 ARHGAP42A6NI28 874 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 TSNARE1Q96NA8 513 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 SUGT1Q9Y2Z0 365 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 HDLBPQ00341 1268 aaKnown RBP16.65■□□□□ 0.26
SHH-201ENST00000297261 BIRC2Q13490 618 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 PSMD6Q15008 389 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 GNPTABQ3T906 1256 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 FOXR1Q6PIV2 292 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 CLEC10AQ8IUN9 316 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 ZMYND12Q9H0C1 365 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 SNX24Q9Y343 169 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 GYPCP04921 128 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 SRGNP10124 158 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 TNFAIP1Q13829 316 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 PPP1R21Q6ZMI0 780 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 MIGA2Q7L4E1 593 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 FOXP4Q8IVH2 680 aaPredicted RBP16.65■□□□□ 0.26
SHH-201ENST00000297261 TAB3Q8N5C8 712 aaPredicted RBP16.65■□□□□ 0.26
SHH-201ENST00000297261 CUEDC2Q9H467 287 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 PICK1Q9NRD5 415 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 COL4A3BPQ9Y5P4 624 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 PASKQ96RG2 1323 aa16.65■□□□□ 0.26
SHH-201ENST00000297261 FGGP02679 453 aa16.64■□□□□ 0.26
SHH-201ENST00000297261 SERPING1P05155 500 aa16.64■□□□□ 0.26
SHH-201ENST00000297261 RASA1P20936 1047 aa16.64■□□□□ 0.26
SHH-201ENST00000297261 CUL1Q13616 776 aa16.64■□□□□ 0.26
SHH-201ENST00000297261 PBKQ96KB5 322 aa16.64■□□□□ 0.26
SHH-201ENST00000297261 HAUS2Q9NVX0 235 aa16.64■□□□□ 0.26
SHH-201ENST00000297261 SNX12Q9UMY4 172 aa16.64■□□□□ 0.26
SHH-201ENST00000297261 PSMC4P43686 418 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 CTAGE3PQ8IX95 158 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 CCDC110Q8TBZ0 833 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 ZNF473Q8WTR7 871 aaKnown RBP16.64■□□□□ 0.25
SHH-201ENST00000297261 CHURC1Q8WUH1 139 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 KIAA1024Q9UPX6 916 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 SLIT2O94813 1529 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 SMIM22K7EJ46 135 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 KIF1CO43896 1103 aaKnown RBP16.64■□□□□ 0.25
SHH-201ENST00000297261 GH2P01242 217 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 LSP1P33241 339 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 PPP4CP60510 307 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 PPP2R2AP63151 447 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 SP4Q02446 784 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 TROAPQ12815 778 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 SNX1Q13596 522 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 SLC15A2Q16348 729 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 SREK1Q8WXA9 508 aaKnown RBP16.64■□□□□ 0.25
SHH-201ENST00000297261 NBPF3Q9H094 633 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.64■□□□□ 0.25
SHH-201ENST00000297261 ARHGEF35A5YM69 484 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 IL9RQ01113 521 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 CYP4A11Q02928 519 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 UBE2SQ16763 222 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 CEP128Q6ZU80 1094 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.64■□□□□ 0.25
SHH-201ENST00000297261 PSMD1Q99460 953 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 TSC22D3Q99576 134 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 AMNQ9BXJ7 453 aa16.64■□□□□ 0.25
SHH-201ENST00000297261 DDX25Q9UHL0 483 aaKnown RBP16.64■□□□□ 0.25
SHH-201ENST00000297261 FBXO2Q9UK22 296 aaPredicted RBP16.64■□□□□ 0.25
SHH-201ENST00000297261 BZW2Q9Y6E2 419 aaKnown RBP16.64■□□□□ 0.25
SHH-201ENST00000297261 C5P01031 1676 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 ACSL3O95573 720 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 TFRCP02786 760 aaKnown RBP16.63■□□□□ 0.25
SHH-201ENST00000297261 PRR16Q569H4 304 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 MS4A14Q96JA4 679 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 AGPAT5Q9NUQ2 364 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 STRCP1A6NGW2 1772 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 PP2D1A8MPX8 630 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 GFPT2O94808 682 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 SEPT2Q15019 361 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 DALRD3Q5D0E6 543 aaKnown RBP16.63■□□□□ 0.25
SHH-201ENST00000297261 MAGEF1Q9HAY2 307 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 CD248Q9HCU0 757 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 SH3GLB2Q9NR46 395 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 GGT7Q9UJ14 662 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 LRRN2O75325 713 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 PDHA1P08559 390 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 FERP16591 822 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 MDH1P40925 334 aaKnown RBP16.63■□□□□ 0.25
SHH-201ENST00000297261 EIF3BP55884 814 aaKnown RBP16.63■□□□□ 0.25
SHH-201ENST00000297261 GRIN1Q05586 938 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 TRIM65Q6PJ69 517 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 TPH2Q8IWU9 490 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 FBXL16Q8N461 479 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 EPN3Q9H201 632 aa16.63■□□□□ 0.25
SHH-201ENST00000297261 I3L4J1 428 aa16.62■□□□□ 0.25
SHH-201ENST00000297261 HARSP12081 509 aaKnown RBP16.62■□□□□ 0.25
SHH-201ENST00000297261 CDC42EP5Q6NZY7 148 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms