RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ANKFY1Q9P2R3 1169 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 MYO6Q9UM54 1294 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 MYH2Q9UKX2 1941 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 PIK3CDO00329 1044 aa12.71□□□□□ -0.38
VPS4A-201ENST00000254950 AFPP02771 609 aaKnown RBP12.71□□□□□ -0.38
VPS4A-201ENST00000254950 NDST4Q9H3R1 872 aa12.71□□□□□ -0.38
VPS4A-201ENST00000254950 KCND2Q9NZV8 630 aa12.71□□□□□ -0.38
VPS4A-201ENST00000254950 ODF2LQ9ULJ1 636 aa12.71□□□□□ -0.38
VPS4A-201ENST00000254950 KRT5P13647 590 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 TNFAIP3P21580 790 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 RDXP35241 583 aaKnown RBP12.7□□□□□ -0.38
VPS4A-201ENST00000254950 STAT5BP51692 787 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 SCFD2Q8WU76 684 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 TIPINQ9BVW5 301 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 MOV10L1Q9BXT6 1211 aaKnown RBP12.7□□□□□ -0.38
VPS4A-201ENST00000254950 ZFYVE28Q9HCC9 887 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 KBTBD4Q9NVX7 518 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 TAF1P21675 1872 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 ERLIN2O94905 339 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 DLATP10515 647 aaKnown RBP12.7□□□□□ -0.38
VPS4A-201ENST00000254950 STK4Q13043 487 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 ZNF746Q6NUN9 644 aaPredicted RBP12.7□□□□□ -0.38
VPS4A-201ENST00000254950 TYW1Q9NV66 732 aaKnown RBP12.7□□□□□ -0.38
VPS4A-201ENST00000254950 AGTPBP1Q9UPW5 1226 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 HIP1RO75146 1068 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 CYP3A4P08684 503 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 CASP14P31944 242 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 MAGEA1P43355 309 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 SLC30A10Q6XR72 485 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 REEP2Q9BRK0 252 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 ACBD3Q9H3P7 528 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 PCIF1Q9H4Z3 704 aa12.7□□□□□ -0.38
VPS4A-201ENST00000254950 BAZ2AQ9UIF9 1905 aaKnown RBP12.7□□□□□ -0.38
VPS4A-201ENST00000254950 FAM237AA0A1B0GTK4 181 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 FAM86B1E9PN63 330 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 FAM86B2P0C5J1 330 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 STAT1P42224 750 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 POLR2FP61218 127 aaKnown RBP12.69□□□□□ -0.38
VPS4A-201ENST00000254950 ZNF569Q5MCW4 686 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 MOB2Q70IA6 237 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 C17orf53Q8N3J3 647 aaPredicted RBP12.69□□□□□ -0.38
VPS4A-201ENST00000254950 CYP2W1Q8TAV3 490 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 CACTINQ8WUQ7 758 aaKnown RBP12.69□□□□□ -0.38
VPS4A-201ENST00000254950 HPS3Q969F9 1004 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 TSGA10Q9BZW7 698 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 UNC45AQ9H3U1 944 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 CEP83Q9Y592 693 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 COL5A3P25940 1745 aaPredicted RBP12.69□□□□□ -0.38
VPS4A-201ENST00000254950 MED24O75448 989 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 MUTP22033 750 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 CIITAP33076 1130 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 FMR1Q06787 632 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS4A-201ENST00000254950 ARHGAP44Q17R89 818 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 MUM1L1Q5H9M0 696 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 NIPA1Q7RTP0 329 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 DNERQ8NFT8 737 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 LMBR1Q8WVP7 490 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 PSPC1Q8WXF1 523 aaKnown RBP12.69□□□□□ -0.38
VPS4A-201ENST00000254950 CTAGE9A4FU28 777 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 LGALS16A8MUM7 142 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 PPP1R11O60927 126 aaPredicted RBP12.69□□□□□ -0.38
VPS4A-201ENST00000254950 DGAT1O75907 488 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 NR3C1P04150 777 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 PTGER2P43116 358 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 SREBF2Q12772 1141 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 PTPN21Q16825 1174 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 SYT10Q6XYQ8 523 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 SYT2Q8N9I0 419 aaPredicted RBP12.69□□□□□ -0.38
VPS4A-201ENST00000254950 PDLIM2Q96JY6 352 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 MTRQ99707 1265 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 NPHP3-ACAD11A0A0J9YXS1 232 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 SLC16A4O15374 487 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 USP2O75604 605 aaPredicted RBP12.69□□□□□ -0.38
VPS4A-201ENST00000254950 GPIHBP1Q8IV16 184 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 MTMR9Q96QG7 549 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 FUCA2Q9BTY2 467 aa12.69□□□□□ -0.38
VPS4A-201ENST00000254950 A1CFQ9NQ94 594 aaKnown RBP12.69□□□□□ -0.38
VPS4A-201ENST00000254950 CCDC88AQ3V6T2 1871 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 SRGAP2CP0DJJ0 459 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 FKBP1BP68106 108 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 MYL7Q01449 175 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 PGM5Q15124 567 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 TEX35Q5T0J7 233 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 CLMNQ96JQ2 1002 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 SYNCQ9H7C4 482 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 ANKEF1Q9NU02 776 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 DDX60Q8IY21 1712 aaKnown RBP12.68□□□□□ -0.38
VPS4A-201ENST00000254950 BCORQ6W2J9 1755 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 SPDYE5A6NIY4 337 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 PDHXO00330 501 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 ERLIN1O75477 346 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 CYP11B2P19099 503 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 HACE1Q8IYU2 909 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 NLRP4Q96MN2 994 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 MYH13Q9UKX3 1938 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 CNTNAP1P78357 1384 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 DENND3A2RUS2 1198 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 ZEB2O60315 1214 aa12.68□□□□□ -0.38
VPS4A-201ENST00000254950 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.68□□□□□ -0.386e-6■□□□□ 9
VPS4A-201ENST00000254950 SH2D3AQ9BRG2 576 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms