RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	YEH2	Q07950	538 aa		4.36	□□□□□ -1.71
CDC48	YDL126C	ZPS1	Q12512	249 aa		4.36	□□□□□ -1.71
CDC48	YDL126C	YHR213W-A	Q8TGT4	77 aa		4.36	□□□□□ -1.71
CDC48	YDL126C	YPT6	Q99260	215 aa		4.36	□□□□□ -1.71
CDC48	YDL126C	VPS63	O13549	108 aa		4.36	□□□□□ -1.71
CDC48	YDL126C	RPL4A	P10664	362 aa	Known RBP	4.36	□□□□□ -1.71
CDC48	YDL126C	EST1	P17214	699 aa	Predicted RBP	4.36	□□□□□ -1.71
CDC48	YDL126C	EMC1	P25574	760 aa		4.36	□□□□□ -1.71
CDC48	YDL126C	YBL055C	P34220	418 aa	Predicted RBP	4.36	□□□□□ -1.71
CDC48	YDL126C	YKL070W	P36087	169 aa		4.36	□□□□□ -1.71
CDC48	YDL126C	PZF1	P39933	429 aa		4.36	□□□□□ -1.71
CDC48	YDL126C	THO1	P40040	218 aa	Known RBP	4.36	□□□□□ -1.71
CDC48	YDL126C	DIM1	P41819	318 aa	Known RBP	4.36	□□□□□ -1.71
CDC48	YDL126C	YNL320W	P42840	284 aa		4.36	□□□□□ -1.71
CDC48	YDL126C	RPL4B	P49626	362 aa	Known RBP	4.36	□□□□□ -1.71
CDC48	YDL126C	MND1	P53102	219 aa		4.36	□□□□□ -1.71
CDC48	YDL126C	YGL108C	P53139	140 aa		4.36	□□□□□ -1.71
CDC48	YDL126C	RIM8	P53179	542 aa		4.36	□□□□□ -1.71
CDC48	YDL126C	MTL1	P53214	551 aa		4.36	□□□□□ -1.71
CDC48	YDL126C	GOR1	P53839	350 aa		4.36	□□□□□ -1.71
CDC48	YDL126C	MTG1	Q03151	367 aa	Predicted RBP	4.36	□□□□□ -1.71
CDC48	YDL126C	YMR187C	Q03236	431 aa		4.36	□□□□□ -1.71
CDC48	YDL126C	POM34	Q12445	299 aa		4.36	□□□□□ -1.71
CDC48	YDL126C	CDC36	P06100	191 aa	Predicted RBP	4.35	□□□□□ -1.71
CDC48	YDL126C	PET54	P10834	293 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	CDC23	P16522	626 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	CMK2	P22517	447 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	GRR1	P24814	1151 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	MSS51	P32335	436 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	ARO4	P32449	370 aa	Known RBP	4.35	□□□□□ -1.71
CDC48	YDL126C	ERG1	P32476	496 aa	Known RBP	4.35	□□□□□ -1.71
CDC48	YDL126C	YHR033W	P38690	423 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	RPP1	P38786	293 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	JHD1	P40034	492 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	UFE1	P41834	346 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	FMP32	P43557	207 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	CAK1	P43568	368 aa	Predicted RBP	4.35	□□□□□ -1.71
CDC48	YDL126C	YDR239C	Q03780	787 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	RPN8	Q08723	338 aa	Known RBP	4.35	□□□□□ -1.71
CDC48	YDL126C	HUA2	Q12134	243 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	MDM20	Q12387	796 aa	Known RBP	4.35	□□□□□ -1.71
CDC48	YDL126C	CMC2	Q3E7A4	109 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	YPK2	P18961	677 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	SEC62	P21825	274 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	RVS161	P25343	265 aa	Known RBP	4.35	□□□□□ -1.71
CDC48	YDL126C	YCL068C	P25593	260 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	SEF1	P34228	1148 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	TSA1	P34760	196 aa	Known RBP	4.35	□□□□□ -1.71
CDC48	YDL126C	ETR1	P38071	380 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	END3	P39013	349 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	YRB2	P40517	327 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	CDC40	P40968	455 aa	Predicted RBP	4.35	□□□□□ -1.71
CDC48	YDL126C	ARO8	P53090	500 aa	Known RBP	4.35	□□□□□ -1.71
CDC48	YDL126C	YGL117W	P53133	265 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	YNL134C	P53912	376 aa	Known RBP	4.35	□□□□□ -1.71
CDC48	YDL126C	STP3	Q05937	343 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	YLL007C	Q07799	665 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	YEH1	Q07804	573 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	NPC2	Q12408	173 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	SKM1	Q12469	655 aa		4.35	□□□□□ -1.71
CDC48	YDL126C	TPK2	P06245	380 aa		4.34	□□□□□ -1.71
CDC48	YDL126C	GAL7	P08431	366 aa		4.34	□□□□□ -1.71
CDC48	YDL126C	MRP2	P10663	115 aa	Predicted RBP	4.34	□□□□□ -1.71
CDC48	YDL126C	GLN3	P18494	730 aa		4.34	□□□□□ -1.71
CDC48	YDL126C	KGD2	P19262	463 aa	Predicted RBP	4.34	□□□□□ -1.71
CDC48	YDL126C	MVD1	P32377	396 aa	Known RBP	4.34	□□□□□ -1.71
CDC48	YDL126C	HXT3	P32466	567 aa	Known RBP	4.34	□□□□□ -1.71
CDC48	YDL126C	BCS1	P32839	456 aa		4.34	□□□□□ -1.71
CDC48	YDL126C	CLG1	P35190	452 aa		4.34	□□□□□ -1.71
CDC48	YDL126C	ALY1	P36117	915 aa		4.34	□□□□□ -1.71
CDC48	YDL126C	YKR073C	P36153	106 aa		4.34	□□□□□ -1.71
CDC48	YDL126C	IMD2	P38697	523 aa	Known RBP	4.34	□□□□□ -1.71
CDC48	YDL126C	PPE1	P38796	400 aa		4.34	□□□□□ -1.71
CDC48	YDL126C	MNN9	P39107	395 aa	Known RBP	4.34	□□□□□ -1.71
CDC48	YDL126C	ASG1	P40467	964 aa		4.34	□□□□□ -1.71
CDC48	YDL126C	TDA10	P42938	290 aa		4.34	□□□□□ -1.71
CDC48	YDL126C	SAD1	P43589	448 aa		4.34	□□□□□ -1.71
CDC48	YDL126C	MRM2	P53123	320 aa		4.34	□□□□□ -1.71
CDC48	YDL126C	YGL036W	P53185	909 aa	Predicted RBP	4.34	□□□□□ -1.71
CDC48	YDL126C	KTR5	P53966	522 aa	Predicted RBP	4.34	□□□□□ -1.71
CDC48	YDL126C	RMI1	Q02685	241 aa		4.34	□□□□□ -1.71
CDC48	YDL126C	GPI17	Q04080	534 aa		4.34	□□□□□ -1.71
CDC48	YDL126C	YDR278C	Q05612	105 aa		4.34	□□□□□ -1.71
CDC48	YDL126C	YLR413W	Q06689	675 aa		4.34	□□□□□ -1.71
CDC48	YDL126C	COX4	P04037	155 aa		4.34	□□□□□ -1.72
CDC48	YDL126C	KAR4	P25583	335 aa		4.34	□□□□□ -1.72
CDC48	YDL126C	YCR015C	P25616	317 aa		4.34	□□□□□ -1.72
CDC48	YDL126C	PRE2	P30656	287 aa	Known RBP	4.34	□□□□□ -1.72
CDC48	YDL126C	WBP1	P33767	430 aa	Known RBP	4.34	□□□□□ -1.72
CDC48	YDL126C	YBR053C	P38235	358 aa		4.34	□□□□□ -1.72
CDC48	YDL126C	SBE22	P38814	852 aa		4.34	□□□□□ -1.72
CDC48	YDL126C	BZZ1	P38822	633 aa		4.34	□□□□□ -1.72
CDC48	YDL126C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.34	□□□□□ -1.72	not detected
CDC48	YDL126C	AST2	P39945	430 aa	Known RBP	4.34	□□□□□ -1.72
CDC48	YDL126C	SSU1	P41930	458 aa		4.34	□□□□□ -1.72
CDC48	YDL126C	RPE1	P46969	238 aa		4.34	□□□□□ -1.72
CDC48	YDL126C	CCC1	P47818	322 aa		4.34	□□□□□ -1.72
CDC48	YDL126C	MCM6	P53091	1017 aa	Known RBP	4.34	□□□□□ -1.72
CDC48	YDL126C	TAF12	Q03761	539 aa		4.34	□□□□□ -1.72
CDC48	YDL126C	GAL83	Q04739	417 aa		4.34	□□□□□ -1.72

Retrieved 100 of 5,963 RNA–protein pairs in 18.8 ms