RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 PDE6AP16499 860 aa6.58□□□□□ -1.36
CD44-239ENST00000639002 PTPN1P18031 435 aaKnown RBP6.58□□□□□ -1.36
CD44-239ENST00000639002 JAM2P57087 298 aa6.58□□□□□ -1.36
CD44-239ENST00000639002 GUCY1A3Q02108 690 aa6.58□□□□□ -1.36
CD44-239ENST00000639002 PUM1Q14671 1186 aaKnown RBP eCLIP6.58□□□□□ -1.36
CD44-239ENST00000639002 CDSNQ15517 529 aa6.58□□□□□ -1.36
CD44-239ENST00000639002 LONRF2Q1L5Z9 754 aa6.58□□□□□ -1.36
CD44-239ENST00000639002 C16orf59Q7L2K0 433 aa6.58□□□□□ -1.36
CD44-239ENST00000639002 PLEKHH3Q7Z736 793 aa6.58□□□□□ -1.36
CD44-239ENST00000639002 PTRH1Q86Y79 214 aaKnown RBP6.58□□□□□ -1.36
CD44-239ENST00000639002 DNERQ8NFT8 737 aa6.58□□□□□ -1.36
CD44-239ENST00000639002 FBXW5Q969U6 566 aa6.58□□□□□ -1.36
CD44-239ENST00000639002 TACO1Q9BSH4 297 aaKnown RBP6.58□□□□□ -1.36
CD44-239ENST00000639002 MEGF9Q9H1U4 602 aa6.58□□□□□ -1.36
CD44-239ENST00000639002 BARX1Q9HBU1 254 aaPredicted RBP6.58□□□□□ -1.36
CD44-239ENST00000639002 SNTG2Q9NY99 539 aa6.58□□□□□ -1.36
CD44-239ENST00000639002 C1QTNF3-AMACRE9PGA6 284 aa6.57□□□□□ -1.36
CD44-239ENST00000639002 ZNF561-AS1K7EIQ3 104 aa6.57□□□□□ -1.36
CD44-239ENST00000639002 CNOT4O95628 575 aaKnown RBP6.57□□□□□ -1.36
CD44-239ENST00000639002 CRTAMO95727 393 aa6.57□□□□□ -1.36
CD44-239ENST00000639002 CSF2RBP32927 897 aa6.57□□□□□ -1.36
CD44-239ENST00000639002 GABREP78334 506 aa6.57□□□□□ -1.36
CD44-239ENST00000639002 ARHGEF18Q6ZSZ5 1173 aa6.57□□□□□ -1.36
CD44-239ENST00000639002 LRP10Q7Z4F1 713 aa6.57□□□□□ -1.36
CD44-239ENST00000639002 ARMC5Q96C12 935 aa6.57□□□□□ -1.36
CD44-239ENST00000639002 DEPDC7Q96QD5 511 aa6.57□□□□□ -1.36
CD44-239ENST00000639002 HIRIP3Q9BW71 556 aaPredicted RBP6.57□□□□□ -1.36
CD44-239ENST00000639002 KATNBL1Q9H079 304 aa6.57□□□□□ -1.36
CD44-239ENST00000639002 SMURF1Q9HCE7 757 aa6.57□□□□□ -1.36
CD44-239ENST00000639002 CATSPERZQ9NTU4 200 aa6.57□□□□□ -1.36
CD44-239ENST00000639002 PTPN22Q9Y2R2 807 aa6.57□□□□□ -1.36
CD44-239ENST00000639002 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.56□□□□□ -1.36
CD44-239ENST00000639002 NPEPPSL1A6NEC2 478 aa6.56□□□□□ -1.36
CD44-239ENST00000639002 KCNK3O14649 394 aa6.56□□□□□ -1.36
CD44-239ENST00000639002 FBXO21O94952 628 aa6.56□□□□□ -1.36
CD44-239ENST00000639002 SEC23AQ15436 765 aa6.56□□□□□ -1.36
CD44-239ENST00000639002 NLGN4XQ8N0W4 816 aa6.56□□□□□ -1.36
CD44-239ENST00000639002 JMYQ8N9B5 988 aa6.56□□□□□ -1.36
CD44-239ENST00000639002 BORCS6Q96GS4 357 aa6.56□□□□□ -1.36
CD44-239ENST00000639002 WWC2-AS2Q96NR7 200 aa6.56□□□□□ -1.36
CD44-239ENST00000639002 DNAJC7Q99615 494 aa6.56□□□□□ -1.36
CD44-239ENST00000639002 SLC52A2Q9HAB3 445 aa6.56□□□□□ -1.36
CD44-239ENST00000639002 MATN3O15232 486 aa6.55□□□□□ -1.36
CD44-239ENST00000639002 C4BPAP04003 597 aaKnown RBP6.55□□□□□ -1.36
CD44-239ENST00000639002 KRT15P19012 456 aa6.55□□□□□ -1.36
CD44-239ENST00000639002 TNFRSF1AP19438 455 aa6.55□□□□□ -1.36
CD44-239ENST00000639002 LACTBP83111 547 aaPredicted RBP6.55□□□□□ -1.36
CD44-239ENST00000639002 GPR155Q7Z3F1 870 aa6.55□□□□□ -1.36
CD44-239ENST00000639002 GSTCDQ8NEC7 633 aa6.55□□□□□ -1.36
CD44-239ENST00000639002 SLC7A14Q8TBB6 771 aa6.55□□□□□ -1.36
CD44-239ENST00000639002 RIC8BQ9NVN3 520 aa6.55□□□□□ -1.36
CD44-239ENST00000639002 CCDC66A2RUB6 948 aa6.54□□□□□ -1.36
CD44-239ENST00000639002 PATE3B3GLJ2 98 aa6.54□□□□□ -1.36
CD44-239ENST00000639002 H0Y858 1186 aa6.54□□□□□ -1.36
CD44-239ENST00000639002 ZNF888P0CJ79 500 aaPredicted RBP6.54□□□□□ -1.36
CD44-239ENST00000639002 FIGNQ5HY92 759 aa6.54□□□□□ -1.36
CD44-239ENST00000639002 SLFN13Q68D06 897 aa6.54□□□□□ -1.36
CD44-239ENST00000639002 FSTL4Q6MZW2 842 aa6.54□□□□□ -1.36
CD44-239ENST00000639002 CHST13Q8NET6 341 aa6.54□□□□□ -1.36
CD44-239ENST00000639002 DVL3Q92997 716 aaPredicted RBP6.54□□□□□ -1.36
CD44-239ENST00000639002 SCLYQ96I15 445 aa6.54□□□□□ -1.36
CD44-239ENST00000639002 IPO9Q96P70 1041 aaKnown RBP6.54□□□□□ -1.36
CD44-239ENST00000639002 BTBD7Q9P203 1132 aa6.54□□□□□ -1.36
CD44-239ENST00000639002 ATP23Q9Y6H3 246 aa6.54□□□□□ -1.36
CD44-239ENST00000639002 SLC4A7Q9Y6M7 1214 aa6.54□□□□□ -1.36
CD44-239ENST00000639002 KCNA6P17658 529 aa6.53□□□□□ -1.36
CD44-239ENST00000639002 DNM2P50570 870 aa6.53□□□□□ -1.36
CD44-239ENST00000639002 TM4SF20Q53R12 229 aa6.53□□□□□ -1.36
CD44-239ENST00000639002 CIR1Q86X95 450 aaPredicted RBP6.53□□□□□ -1.36
CD44-239ENST00000639002 JADE2Q9NQC1 790 aa6.53□□□□□ -1.36
CD44-239ENST00000639002 CLASP2O75122 1294 aaKnown RBP6.52□□□□□ -1.37
CD44-239ENST00000639002 RASGRP1O95267 797 aa6.52□□□□□ -1.37
CD44-239ENST00000639002 MPIG6BO95866 241 aa6.52□□□□□ -1.37
CD44-239ENST00000639002 AOAHP28039 575 aa6.52□□□□□ -1.37
CD44-239ENST00000639002 MC4RP32245 332 aa6.52□□□□□ -1.37
CD44-239ENST00000639002 ST5P78524 1137 aa6.52□□□□□ -1.37
CD44-239ENST00000639002 TOP3AQ13472 1001 aaPredicted RBP6.52□□□□□ -1.37
CD44-239ENST00000639002 CRY1Q16526 586 aa6.52□□□□□ -1.37
CD44-239ENST00000639002 TRIM61Q5EBN2 209 aa6.52□□□□□ -1.37
CD44-239ENST00000639002 RALYLQ86SE5 291 aaKnown RBP6.52□□□□□ -1.37
CD44-239ENST00000639002 REXO1L1PQ8IX06 675 aa6.52□□□□□ -1.37
CD44-239ENST00000639002 MKL1Q969V6 931 aa6.52□□□□□ -1.37
CD44-239ENST00000639002 NDOR1Q9UHB4 597 aa6.52□□□□□ -1.37
CD44-239ENST00000639002 ESYT3A0FGR9 886 aa6.51□□□□□ -1.37
CD44-239ENST00000639002 NAT1P18440 290 aa6.51□□□□□ -1.37
CD44-239ENST00000639002 POLD1P28340 1107 aa6.51□□□□□ -1.37
CD44-239ENST00000639002 GJA4P35212 333 aa6.51□□□□□ -1.37
CD44-239ENST00000639002 IL13RA1P78552 427 aa6.51□□□□□ -1.37
CD44-239ENST00000639002 R3HDM1Q15032 1099 aaKnown RBP6.51□□□□□ -1.37
CD44-239ENST00000639002 ZC3H12BQ5HYM0 836 aaKnown RBP6.51□□□□□ -1.37
CD44-239ENST00000639002 ABHD17CQ6PCB6 329 aa6.51□□□□□ -1.37
CD44-239ENST00000639002 NOSTRINQ8IVI9 506 aa6.51□□□□□ -1.37
CD44-239ENST00000639002 ZC3H7AQ8IWR0 971 aaKnown RBP6.51□□□□□ -1.37
CD44-239ENST00000639002 LILRB2Q8N423 598 aa6.51□□□□□ -1.37
CD44-239ENST00000639002 Q8TCH9 128 aa6.51□□□□□ -1.37
CD44-239ENST00000639002 GNRHR2Q96P88 292 aa6.51□□□□□ -1.37
CD44-239ENST00000639002 SRPK1Q96SB4 655 aaKnown RBP6.51□□□□□ -1.37
CD44-239ENST00000639002 AMNQ9BXJ7 453 aa6.51□□□□□ -1.37
CD44-239ENST00000639002 KLC2Q9H0B6 622 aa6.51□□□□□ -1.37
CD44-239ENST00000639002 TMPRSS5Q9H3S3 457 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms