RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 CALUO43852 315 aaPredicted RBP11.99□□□□□ -0.49
CLN3-244ENST00000636147 EVI5O60447 810 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 EXOC3O60645 756 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 FSBPO95073 299 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 CTNNA2P26232 953 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 SKOR1P84550 965 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 TRIM28Q13263 835 aaKnown RBP11.99□□□□□ -0.49
CLN3-244ENST00000636147 SEC23AQ15436 765 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 UAP1Q16222 522 aaPredicted RBP11.99□□□□□ -0.49
CLN3-244ENST00000636147 CAPRIN2Q6IMN6 1127 aaKnown RBP11.99□□□□□ -0.49
CLN3-244ENST00000636147 CAVIN3Q969G5 261 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 BTG4Q9NY30 223 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 TMOD4Q9NZQ9 345 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 STK17AQ9UEE5 414 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 DBR1Q9UK59 544 aaKnown RBP11.99□□□□□ -0.49
CLN3-244ENST00000636147 THAP12O43422 761 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 AFPP02771 609 aaKnown RBP11.99□□□□□ -0.49
CLN3-244ENST00000636147 MYBL1P10243 752 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 FGFR4P22455 802 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 SLC16A2P36021 539 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 GSTO1P78417 241 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 MEA1Q16626 185 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 TSNAXIP1Q2TAA8 658 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 PARP10Q53GL7 1025 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 KCNV1Q6PIU1 500 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 ZNF365Q70YC5 407 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 ADGRA1Q86SQ6 560 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 FUKQ8N0W3 1084 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 ZNF507Q8TCN5 953 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 GLG1Q92896 1179 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 BCS1LQ9Y276 419 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 PNPLA7Q6ZV29 1317 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 TCRBV5S4A2TA0A5A2 114 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 CPP00450 1065 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 ERVK-9P63128 1117 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 PRR16Q569H4 304 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 CYP4F22Q6NT55 531 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 STAMBPL1Q96FJ0 436 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 TMBIM4Q9HC24 238 aa11.99□□□□□ -0.49
CLN3-244ENST00000636147 CLTCQ00610 1675 aaKnown RBP11.98□□□□□ -0.49
CLN3-244ENST00000636147 SSU72P8A0A1W2PR75 194 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 GRID2IPA4D2P6 1211 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 CCT8L1PA6NM43 557 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 ITGA4P13612 1032 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 SLC9A1P19634 815 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 PMS2P54278 862 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 EIF3BP55884 814 aaKnown RBP11.98□□□□□ -0.49
CLN3-244ENST00000636147 RPS8P62241 208 aaKnown RBP11.98□□□□□ -0.49
CLN3-244ENST00000636147 COASYQ13057 564 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 DRP2Q13474 957 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 IL17AQ16552 155 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 TMED8Q6PL24 325 aaPredicted RBP11.98□□□□□ -0.49
CLN3-244ENST00000636147 GLYCTKQ8IVS8 523 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 ARMC2Q8NEN0 867 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 SETDB2Q96T68 719 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 SH3GL2Q99962 352 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 TMEM47Q9BQJ4 181 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 MTA3Q9BTC8 594 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 BRIP1Q9BX63 1249 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 NT5C3AQ9H0P0 336 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 ISCUQ9H1K1 167 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 ZBTB21Q9ULJ3 1066 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 LEMD3Q9Y2U8 911 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 NPHP3-ACAD11A0A0J9YXS1 232 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 PCP11498 1178 aaKnown RBP11.98□□□□□ -0.49
CLN3-244ENST00000636147 ATP5DP30049 168 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 KCNQ4P56696 695 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 NAB2Q15742 525 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 USH1GQ495M9 461 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 LZTS2Q9BRK4 669 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 ECT2Q9H8V3 914 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 KBTBD4Q9NVX7 518 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 BZW2Q9Y6E2 419 aaKnown RBP11.98□□□□□ -0.49
CLN3-244ENST00000636147 PLA2G4BP0C869 781 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 PRLRP16471 622 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 ADCY8P40145 1251 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 PDE6CP51160 858 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 PTK2Q05397 1052 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 TBC1D10BQ4KMP7 808 aaPredicted RBP11.98□□□□□ -0.49
CLN3-244ENST00000636147 TAB3Q8N5C8 712 aaPredicted RBP11.98□□□□□ -0.49
CLN3-244ENST00000636147 METTL13Q8N6R0 699 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 CUL5Q93034 780 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 STMN2Q93045 179 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 DDX23Q9BUQ8 820 aaKnown RBP11.98□□□□□ -0.49
CLN3-244ENST00000636147 SLIT1O75093 1534 aa11.98□□□□□ -0.49
CLN3-244ENST00000636147 LRRD1A4D1F6 860 aa11.97□□□□□ -0.49
CLN3-244ENST00000636147 SHOX2O60902 331 aaPredicted RBP11.97□□□□□ -0.49
CLN3-244ENST00000636147 CAND2O75155 1236 aa11.97□□□□□ -0.49
CLN3-244ENST00000636147 RBBP5Q15291 538 aaKnown RBP11.97□□□□□ -0.49
CLN3-244ENST00000636147 STXBP4Q6ZWJ1 553 aa11.97□□□□□ -0.49
CLN3-244ENST00000636147 PHLDB2Q86SQ0 1253 aa11.97□□□□□ -0.49
CLN3-244ENST00000636147 LRRC34Q8IZ02 419 aa11.97□□□□□ -0.49
CLN3-244ENST00000636147 PPFIBP2Q8ND30 876 aa11.97□□□□□ -0.49
CLN3-244ENST00000636147 ETNK1Q9HBU6 452 aa11.97□□□□□ -0.49
CLN3-244ENST00000636147 CCDC87Q9NVE4 849 aa11.97□□□□□ -0.49
CLN3-244ENST00000636147 PEAK1Q9H792 1746 aa11.97□□□□□ -0.49
CLN3-244ENST00000636147 A0A1W2PQJ5 194 aa11.97□□□□□ -0.49
CLN3-244ENST00000636147 CCDC160A6NGH7 325 aa11.97□□□□□ -0.49
CLN3-244ENST00000636147 TCP11X1B4DZS4 312 aa11.97□□□□□ -0.49
CLN3-244ENST00000636147 POC1B-GALNT4F8VUJ3 575 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms