RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 SNX17Q15036 470 aa21.5■■□□□ 1.03
SQSTM1-216ENST00000626660 LRRC26Q2I0M4 334 aa21.5■■□□□ 1.03
SQSTM1-216ENST00000626660 PDXDC2PQ6P474 469 aa21.5■■□□□ 1.03
SQSTM1-216ENST00000626660 FAM173BQ6P4H8 233 aa21.5■■□□□ 1.03
SQSTM1-216ENST00000626660 NFRKBQ6P4R8 1299 aa21.5■■□□□ 1.03
SQSTM1-216ENST00000626660 CCDC60Q8IWA6 550 aaPredicted RBP21.5■■□□□ 1.03
SQSTM1-216ENST00000626660 PCYT2Q99447 389 aa21.5■■□□□ 1.03
SQSTM1-216ENST00000626660 RAB34Q9BZG1 259 aa21.5■■□□□ 1.03
SQSTM1-216ENST00000626660 ATP11BQ9Y2G3 1177 aa21.5■■□□□ 1.03
SQSTM1-216ENST00000626660 MARK3P27448 753 aa21.49■■□□□ 1.03
SQSTM1-216ENST00000626660 PTPN11Q06124 597 aaPredicted RBP21.49■■□□□ 1.03
SQSTM1-216ENST00000626660 SPIRE1Q08AE8 756 aa21.49■■□□□ 1.03
SQSTM1-216ENST00000626660 SF3A1Q15459 793 aaKnown RBP21.49■■□□□ 1.03
SQSTM1-216ENST00000626660 TRIM60Q495X7 471 aa21.49■■□□□ 1.03
SQSTM1-216ENST00000626660 CKAP2LQ8IYA6 745 aa21.49■■□□□ 1.03
SQSTM1-216ENST00000626660 SLC43A3Q8NBI5 491 aa21.49■■□□□ 1.03
SQSTM1-216ENST00000626660 AFAP1L1Q8TED9 768 aa21.49■■□□□ 1.03
SQSTM1-216ENST00000626660 TNPO1Q92973 898 aaKnown RBP21.49■■□□□ 1.03
SQSTM1-216ENST00000626660 ATP6V0A1Q93050 837 aa21.49■■□□□ 1.03
SQSTM1-216ENST00000626660 GABBR1Q9UBS5 961 aa21.49■■□□□ 1.03
SQSTM1-216ENST00000626660 GRIN2DO15399 1336 aa21.49■■□□□ 1.03
SQSTM1-216ENST00000626660 ALPK3Q96L96 1907 aa21.49■■□□□ 1.03
SQSTM1-216ENST00000626660 DCDC2CA8MYV0 355 aa21.48■■□□□ 1.03
SQSTM1-216ENST00000626660 EML1O00423 815 aa21.48■■□□□ 1.03
SQSTM1-216ENST00000626660 TLR3O15455 904 aaKnown RBP21.48■■□□□ 1.03
SQSTM1-216ENST00000626660 TECP42680 631 aa21.48■■□□□ 1.03
SQSTM1-216ENST00000626660 CDK7P50613 346 aa21.48■■□□□ 1.03
SQSTM1-216ENST00000626660 NUCB2P80303 420 aa21.48■■□□□ 1.03
SQSTM1-216ENST00000626660 EPHA7Q15375 998 aa21.48■■□□□ 1.03
SQSTM1-216ENST00000626660 DTHD1Q6ZMT9 781 aa21.48■■□□□ 1.03
SQSTM1-216ENST00000626660 PQBP1O60828 265 aaKnown RBP21.47■■□□□ 1.03
SQSTM1-216ENST00000626660 DKC1O60832 514 aaKnown RBP eCLIP21.47■■□□□ 1.03
SQSTM1-216ENST00000626660 FXR2P51116 673 aaKnown RBP eCLIP21.47■■□□□ 1.031e-11■■■□□ 15.7
SQSTM1-216ENST00000626660 CEBPZQ03701 1054 aaKnown RBP21.47■■□□□ 1.03
SQSTM1-216ENST00000626660 ARL6IP4Q66PJ3 421 aaKnown RBP21.47■■□□□ 1.03
SQSTM1-216ENST00000626660 SESTD1Q86VW0 696 aa21.47■■□□□ 1.03
SQSTM1-216ENST00000626660 ERMNQ8TAM6 284 aa21.47■■□□□ 1.03
SQSTM1-216ENST00000626660 DPF3Q92784 378 aa21.47■■□□□ 1.03
SQSTM1-216ENST00000626660 TRPC6Q9Y210 931 aa21.47■■□□□ 1.03
SQSTM1-216ENST00000626660 ATP6V1DQ9Y5K8 247 aa21.47■■□□□ 1.03
SQSTM1-216ENST00000626660 MAFBQ9Y5Q3 323 aaPredicted RBP21.47■■□□□ 1.03
SQSTM1-216ENST00000626660 CLIC4Q9Y696 253 aa21.47■■□□□ 1.03
SQSTM1-216ENST00000626660 IGSF9BQ9UPX0 1349 aa21.47■■□□□ 1.03
SQSTM1-216ENST00000626660 POTEMA6NI47 508 aa21.46■■□□□ 1.03
SQSTM1-216ENST00000626660 EVI5O60447 810 aa21.46■■□□□ 1.03
SQSTM1-216ENST00000626660 SMIM10L2AP0DMW4 78 aa21.46■■□□□ 1.03
SQSTM1-216ENST00000626660 SMIM10L2BP0DMW5 78 aa21.46■■□□□ 1.03
SQSTM1-216ENST00000626660 TLE2Q04725 743 aa21.46■■□□□ 1.03
SQSTM1-216ENST00000626660 PLCB4Q15147 1175 aa21.46■■□□□ 1.03
SQSTM1-216ENST00000626660 ATL3Q6DD88 541 aa21.46■■□□□ 1.03
SQSTM1-216ENST00000626660 ANKRD33Q7Z3H0 272 aa21.46■■□□□ 1.03
SQSTM1-216ENST00000626660 PPP1R13LQ8WUF5 828 aa21.46■■□□□ 1.03
SQSTM1-216ENST00000626660 FAM167AQ96KS9 214 aa21.46■■□□□ 1.03
SQSTM1-216ENST00000626660 TOX2Q96NM4 488 aa21.46■■□□□ 1.03
SQSTM1-216ENST00000626660 USP28Q96RU2 1077 aa21.46■■□□□ 1.03
SQSTM1-216ENST00000626660 RNPEPQ9H4A4 650 aa21.46■■□□□ 1.03
SQSTM1-216ENST00000626660 HDAC6Q9UBN7 1215 aa21.46■■□□□ 1.03
SQSTM1-216ENST00000626660 NOD1Q9Y239 953 aa21.46■■□□□ 1.03
SQSTM1-216ENST00000626660 POTEB3A0JP26 581 aa21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 C17orf102A2RUQ5 167 aa21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 P4HBP07237 508 aaKnown RBP21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 GNAT1P11488 350 aa21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 QARSP47897 775 aaKnown RBP21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 PSMC5P62195 406 aa21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 PPFIA1Q13136 1202 aa21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 PDIA5Q14554 519 aa21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 FOXD4L6Q3SYB3 417 aaPredicted RBP21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 POTEBQ6S5H4 581 aa21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 FOXD4L3Q6VB84 417 aaPredicted RBP21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 BANK1Q8NDB2 785 aa21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 NEK9Q8TD19 979 aa21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 ATP8B4Q8TF62 1192 aa21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 EIF2AK1Q9BQI3 630 aaKnown RBP21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 FTOQ9C0B1 505 aaKnown RBP eCLIP21.45■■□□□ 1.028e-6■■■□□ 15.4
SQSTM1-216ENST00000626660 LRWD1Q9UFC0 647 aa21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 GTF2IRD1Q9UHL9 959 aa21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 ZDHHC9Q9Y397 364 aa21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 STK24Q9Y6E0 443 aa21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 TRIP12Q14669 1992 aaPredicted RBP21.45■■□□□ 1.02
SQSTM1-216ENST00000626660 HBP1O60381 514 aa21.44■■□□□ 1.02
SQSTM1-216ENST00000626660 DDIT3P35638 169 aa21.44■■□□□ 1.02
SQSTM1-216ENST00000626660 STK38Q15208 465 aa21.44■■□□□ 1.02
SQSTM1-216ENST00000626660 FAM126BQ8IXS8 530 aa21.44■■□□□ 1.02
SQSTM1-216ENST00000626660 C7orf61Q8IZ16 206 aa21.44■■□□□ 1.02
SQSTM1-216ENST00000626660 DYDC2Q96IM9 177 aa21.44■■□□□ 1.02
SQSTM1-216ENST00000626660 NRBP2Q9NSY0 501 aa21.44■■□□□ 1.02
SQSTM1-216ENST00000626660 CIZ1Q9ULV3 898 aaPredicted RBP21.44■■□□□ 1.02
SQSTM1-216ENST00000626660 NRCAMQ92823 1304 aa21.44■■□□□ 1.02
SQSTM1-216ENST00000626660 VWA3AA6NCI4 1184 aa21.43■■□□□ 1.02
SQSTM1-216ENST00000626660 RRN3P2A6NIE6 340 aa21.43■■□□□ 1.02
SQSTM1-216ENST00000626660 OATP04181 439 aa21.43■■□□□ 1.02
SQSTM1-216ENST00000626660 NASPP49321 788 aaPredicted RBP21.43■■□□□ 1.02
SQSTM1-216ENST00000626660 PRKCEQ02156 737 aa21.43■■□□□ 1.02
SQSTM1-216ENST00000626660 CYP4A11Q02928 519 aa21.43■■□□□ 1.02
SQSTM1-216ENST00000626660 PTPAQ15257 358 aa21.43■■□□□ 1.02
SQSTM1-216ENST00000626660 UGCGQ16739 394 aa21.43■■□□□ 1.02
SQSTM1-216ENST00000626660 HAUS3Q68CZ6 603 aa21.43■■□□□ 1.02
SQSTM1-216ENST00000626660 IGSF22Q8N9C0 903 aa21.43■■□□□ 1.02
SQSTM1-216ENST00000626660 BBXQ8WY36 941 aaPredicted RBP21.43■■□□□ 1.02
SQSTM1-216ENST00000626660 LXNQ9BS40 222 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms