RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 RILPL1Q5EBL4 403 aa5.43□□□□□ -1.54
VPS13D-214ENST00000620676 IQCDQ96DY2 449 aa5.43□□□□□ -1.54
VPS13D-214ENST00000620676 CAPN9O14815 690 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 XPOTO43592 962 aaKnown RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 SYF2O95926 243 aaKnown RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 ATP2B4P23634 1241 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 PTGDRQ13258 359 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 LDHAL6AQ6ZMR3 332 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 SCHIP1Q9P0W5 487 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 ZMYM6O95789 1325 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 NPHP3-ACAD11A0A0J9YXS1 232 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 GOLGA8IPA6NC78 632 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 ATP6V1G1O75348 118 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 CDC27P30260 824 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 ALDH5A1P51649 535 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 VCPP55072 806 aaKnown RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 PLOD1Q02809 727 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 TAF1DQ9H5J8 278 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 DDX56Q9NY93 547 aaKnown RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 FOXO6A8MYZ6 492 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 DCUN1D5Q9BTE7 237 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 USP44Q9H0E7 712 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 KDM4CQ9H3R0 1056 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 CHORDC1Q9UHD1 332 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 LEMD3Q9Y2U8 911 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 SPATA31E1Q6ZUB1 1445 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 SPDYE5A6NIY4 337 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 HNRNPCL2B2RXH8 293 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 ORC4O43929 436 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 HNRNPCL1O60812 293 aaKnown RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 BRAFP15056 766 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 CALCRLQ16602 461 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 SFR1Q86XK3 245 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 KLF6Q99612 283 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 SLC13A1Q9BZW2 595 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 DSG1Q02413 1049 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 OCA2Q04671 838 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 ITGB3BPQ13352 177 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 TRAF7Q6Q0C0 670 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 MYCT1Q8N699 235 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 TC2NQ8N9U0 490 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 TMCC1O94876 653 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 PIK3CAP42336 1068 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 KRT79Q5XKE5 535 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 BTNL9Q6UXG8 535 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 PLEKHF1Q96S99 279 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 BMP15O95972 392 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 PYGMP11217 842 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 NELFEP18615 380 aaKnown RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 EML3Q32P44 896 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 RSBN1LQ6PCB5 846 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 CRACR2BQ8N4Y2 399 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 OLFM3Q96PB7 478 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 TM6SF1Q9BZW5 370 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 CLIC5Q9NZA1 410 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 AMACRQ9UHK6 382 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 TRIM43BA6NCK2 446 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 LRRC53A6NM62 1247 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 CCNFP41002 786 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 RAP1GDS1P52306 607 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 SHCBP1LQ9BZQ2 653 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 ADA2Q9NZK5 511 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 ZNF219Q9P2Y4 722 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 LNPEPQ9UIQ6 1025 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 L1RE1Q9UN81 338 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 PP2D1A8MPX8 630 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 IFI35P80217 286 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 SGO2Q562F6 1265 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 SHC4Q6S5L8 630 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 NOC2LQ9Y3T9 749 aaKnown RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 TTC21BQ7Z4L5 1316 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 POLR3AO14802 1390 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 B2RBV5 119 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 CA4P22748 312 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 PEX5P50542 639 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 FXR1P51114 621 aaKnown RBP eCLIP5.42□□□□□ -1.542e-6■■■□□ 15.7
VPS13D-214ENST00000620676 MTTPP55157 894 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 MCL1Q07820 350 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 CARTPTQ16568 116 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 QPCTQ16769 361 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 ANKRD35Q8N283 1001 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 ZNF274Q96GC6 653 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 SSX2IPQ9Y2D8 614 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 MAD1L1Q9Y6D9 718 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 PIK3R4Q99570 1358 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 GTPBP6O43824 516 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 ZAP70P43403 619 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 CCT7Q99832 543 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 BRD8Q9H0E9 1235 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 LGR6Q9HBX8 967 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 ZSCAN5CA6NGD5 496 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 AHCYL1O43865 530 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 LCA5LO95447 670 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 TCN1P20061 433 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-214ENST00000620676 OMA1Q96E52 524 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 ATP11BQ9Y2G3 1177 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 DAB1O75553 588 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 GABPAQ06546 454 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 MFN1Q8IWA4 741 aa5.42□□□□□ -1.54
VPS13D-214ENST00000620676 ADNPQ9H2P0 1102 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms