RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 MAGEA10P43363 369 aaPredicted RBP15.26■□□□□ 0.03
LINC00540-202ENST00000616974 SPIRE1Q08AE8 756 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 MCTP2Q6DN12 878 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 SWSAP1Q6NVH7 229 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 GLG1Q92896 1179 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 BADQ92934 168 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 GTF2IRD1Q9UHL9 959 aa15.26■□□□□ 0.03
LINC00540-202ENST00000616974 A0A087WWV3 80 aa15.25■□□□□ 0.03
LINC00540-202ENST00000616974 CHRDL2Q6WN34 429 aa15.25■□□□□ 0.03
LINC00540-202ENST00000616974 HSCBQ8IWL3 235 aa15.25■□□□□ 0.03
LINC00540-202ENST00000616974 SCLYQ96I15 445 aa15.25■□□□□ 0.03
LINC00540-202ENST00000616974 CHAMP1Q96JM3 812 aa15.25■□□□□ 0.03
LINC00540-202ENST00000616974 WNT8AQ9H1J5 351 aa15.25■□□□□ 0.03
LINC00540-202ENST00000616974 TMEM39AQ9NV64 488 aa15.25■□□□□ 0.03
LINC00540-202ENST00000616974 IGKV6D-21A0A0A0MT36 114 aa15.25■□□□□ 0.03
LINC00540-202ENST00000616974 ZBTB39O15060 712 aa15.25■□□□□ 0.03
LINC00540-202ENST00000616974 LGR5O75473 907 aa15.25■□□□□ 0.03
LINC00540-202ENST00000616974 SUPT20HL2P0C7V6 817 aa15.25■□□□□ 0.03
LINC00540-202ENST00000616974 CCL23P55773 120 aa15.25■□□□□ 0.03
LINC00540-202ENST00000616974 PLCB4Q15147 1175 aa15.25■□□□□ 0.03
LINC00540-202ENST00000616974 SAFBQ15424 915 aaKnown RBP eCLIP15.25■□□□□ 0.03
LINC00540-202ENST00000616974 LMBR1Q8WVP7 490 aa15.25■□□□□ 0.03
LINC00540-202ENST00000616974 ARID2Q68CP9 1835 aa15.24■□□□□ 0.03
LINC00540-202ENST00000616974 POTEMA6NI47 508 aa15.24■□□□□ 0.03
LINC00540-202ENST00000616974 H3BQV1 296 aa15.24■□□□□ 0.03
LINC00540-202ENST00000616974 CAPN2P17655 700 aa15.24■□□□□ 0.03
LINC00540-202ENST00000616974 IGBP1P78318 339 aa15.24■□□□□ 0.03
LINC00540-202ENST00000616974 GNL2Q13823 731 aaKnown RBP15.24■□□□□ 0.03
LINC00540-202ENST00000616974 PTGISQ16647 500 aa15.24■□□□□ 0.03
LINC00540-202ENST00000616974 MARCH8Q5T0T0 291 aa15.24■□□□□ 0.03
LINC00540-202ENST00000616974 MOXD1Q6UVY6 613 aa15.24■□□□□ 0.03
LINC00540-202ENST00000616974 C7orf31Q8N865 590 aa15.24■□□□□ 0.03
LINC00540-202ENST00000616974 C4orf32Q8N8J7 132 aa15.24■□□□□ 0.03
LINC00540-202ENST00000616974 GIMAP8Q8ND71 665 aaPredicted RBP15.24■□□□□ 0.03
LINC00540-202ENST00000616974 BANK1Q8NDB2 785 aa15.24■□□□□ 0.03
LINC00540-202ENST00000616974 TOX2Q96NM4 488 aa15.24■□□□□ 0.03
LINC00540-202ENST00000616974 DISC1Q9NRI5 854 aa15.24■□□□□ 0.03
LINC00540-202ENST00000616974 GABBR1Q9UBS5 961 aa15.24■□□□□ 0.03
LINC00540-202ENST00000616974 SAMM50Q9Y512 469 aa15.24■□□□□ 0.03
LINC00540-202ENST00000616974 EMSYQ7Z589 1322 aa15.24■□□□□ 0.03
LINC00540-202ENST00000616974 DCDC2CA8MYV0 355 aa15.23■□□□□ 0.03
LINC00540-202ENST00000616974 ZBTB42B2RXF5 422 aa15.23■□□□□ 0.03
LINC00540-202ENST00000616974 BACH1O14867 736 aa15.23■□□□□ 0.03
LINC00540-202ENST00000616974 TXKP42681 527 aa15.23■□□□□ 0.03
LINC00540-202ENST00000616974 IL17AQ16552 155 aa15.23■□□□□ 0.03
LINC00540-202ENST00000616974 TTC38Q5R3I4 469 aa15.23■□□□□ 0.03
LINC00540-202ENST00000616974 NFRKBQ6P4R8 1299 aa15.23■□□□□ 0.03
LINC00540-202ENST00000616974 RUFY4Q6ZNE9 571 aa15.23■□□□□ 0.03
LINC00540-202ENST00000616974 MTMR9Q96QG7 549 aa15.23■□□□□ 0.03
LINC00540-202ENST00000616974 NOC4LQ9BVI4 516 aaKnown RBP15.23■□□□□ 0.03
LINC00540-202ENST00000616974 TBC1D22BQ9NU19 505 aa15.23■□□□□ 0.03
LINC00540-202ENST00000616974 RGL1Q9NZL6 768 aa15.23■□□□□ 0.03
LINC00540-202ENST00000616974 COLQQ9Y215 455 aaPredicted RBP15.23■□□□□ 0.03
LINC00540-202ENST00000616974 MTMR6Q9Y217 621 aa15.23■□□□□ 0.03
LINC00540-202ENST00000616974 PTPRSQ13332 1948 aa15.23■□□□□ 0.03
LINC00540-202ENST00000616974 NEMFO60524 1076 aa15.23■□□□□ 0.03
LINC00540-202ENST00000616974 HOXC8P31273 242 aa15.23■□□□□ 0.03
LINC00540-202ENST00000616974 STAT5BP51692 787 aa15.23■□□□□ 0.03
LINC00540-202ENST00000616974 ADAM17P78536 824 aa15.23■□□□□ 0.03
LINC00540-202ENST00000616974 INTS4Q96HW7 963 aaKnown RBP15.23■□□□□ 0.03
LINC00540-202ENST00000616974 TEKT3Q9BXF9 490 aa15.23■□□□□ 0.03
LINC00540-202ENST00000616974 KPNA6O60684 536 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 INSRRP14616 1297 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 CSF2RAP15509 400 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 GPNMBQ14956 572 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 CALCRLQ16602 461 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 FOXD4L6Q3SYB3 417 aaPredicted RBP15.22■□□□□ 0.03
LINC00540-202ENST00000616974 ZNF746Q6NUN9 644 aaPredicted RBP15.22■□□□□ 0.03
LINC00540-202ENST00000616974 FOXD4L3Q6VB84 417 aaPredicted RBP15.22■□□□□ 0.03
LINC00540-202ENST00000616974 C16orf59Q7L2K0 433 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 RIT2Q99578 217 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 GDF15Q99988 308 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 ZNF302Q9NR11 478 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 GBF1Q92538 1859 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 KIAA0355O15063 1070 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 ACRP10323 421 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 CYP4A11Q02928 519 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 C9orf50Q5SZB4 431 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 NCAPH2Q6IBW4 605 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 ZNF579Q8NAF0 562 aaKnown RBP15.22■□□□□ 0.03
LINC00540-202ENST00000616974 PRO3102Q9H379 93 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 HIPK3Q9H422 1215 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 TTC12Q9H892 705 aaPredicted RBP15.22■□□□□ 0.03
LINC00540-202ENST00000616974 PCDHA10Q9Y5I2 948 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 NR2E3Q9Y5X4 410 aa15.22■□□□□ 0.03
LINC00540-202ENST00000616974 PP2D1A8MPX8 630 aa15.21■□□□□ 0.03
LINC00540-202ENST00000616974 STBD1O95210 358 aa15.21■□□□□ 0.03
LINC00540-202ENST00000616974 GCFC2P16383 781 aaKnown RBP15.21■□□□□ 0.03
LINC00540-202ENST00000616974 CDC25AP30304 524 aa15.21■□□□□ 0.03
LINC00540-202ENST00000616974 KRT76Q01546 638 aa15.21■□□□□ 0.03
LINC00540-202ENST00000616974 RESTQ13127 1097 aa15.21■□□□□ 0.03
LINC00540-202ENST00000616974 MBTPS1Q14703 1052 aa15.21■□□□□ 0.03
LINC00540-202ENST00000616974 GRIK4Q16099 956 aa15.21■□□□□ 0.03
LINC00540-202ENST00000616974 TCTN1Q2MV58 587 aa15.21■□□□□ 0.03
LINC00540-202ENST00000616974 TRIM71Q2Q1W2 868 aaKnown RBP15.21■□□□□ 0.03
LINC00540-202ENST00000616974 PDXDC2PQ6P474 469 aa15.21■□□□□ 0.03
LINC00540-202ENST00000616974 TRAF7Q6Q0C0 670 aa15.21■□□□□ 0.03
LINC00540-202ENST00000616974 MIER3Q7Z3K6 550 aa15.21■□□□□ 0.03
LINC00540-202ENST00000616974 SESTD1Q86VW0 696 aa15.21■□□□□ 0.03
LINC00540-202ENST00000616974 ATP6V0A1Q93050 837 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms