RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 FRMD4BQ9Y2L6 1034 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 TMEM247A6NEH6 219 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 MSH2P43246 934 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 NCALDP61601 193 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 LONRF3Q496Y0 759 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 RC3H1Q5TC82 1133 aaKnown RBP11.13□□□□□ -0.63
VPS39-214ENST00000614932 ZNF554Q86TJ5 538 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 WDR60Q8WVS4 1066 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 CHMP6Q96FZ7 201 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 FAM84BQ96KN1 310 aaPredicted RBP11.13□□□□□ -0.63
VPS39-214ENST00000614932 GBP5Q96PP8 586 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.13□□□□□ -0.63
VPS39-214ENST00000614932 ATP8A2Q9NTI2 1148 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 TUBA8Q9NY65 449 aaPredicted RBP11.13□□□□□ -0.63
VPS39-214ENST00000614932 LNPEPQ9UIQ6 1025 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 DAAM1Q9Y4D1 1078 aa11.13□□□□□ -0.63
VPS39-214ENST00000614932 LTBP4Q8N2S1 1624 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 AFF2P51816 1311 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 MAGEB6P1A0A0J9YX57 407 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 ANO9A1A5B4 782 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.12□□□□□ -0.63
VPS39-214ENST00000614932 KRT16P08779 473 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 IARSP41252 1262 aaKnown RBP11.12□□□□□ -0.63
VPS39-214ENST00000614932 SYKP43405 635 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 PEX5P50542 639 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 SULT2A1Q06520 285 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 P3H1Q32P28 736 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 CAVIN4Q5BKX8 364 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 FKBP15Q5T1M5 1219 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 MEX3CQ5U5Q3 659 aaKnown RBP11.12□□□□□ -0.63
VPS39-214ENST00000614932 KRT40Q6A162 431 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 TRPM8Q7Z2W7 1104 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 NEK9Q8TD19 979 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 RSPH1Q8WYR4 309 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 CLMNQ96JQ2 1002 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 NR1H4Q96RI1 486 aaPredicted RBP11.12□□□□□ -0.63
VPS39-214ENST00000614932 FAM217BQ9NTX9 383 aaPredicted RBP11.12□□□□□ -0.63
VPS39-214ENST00000614932 CHMP2BQ9UQN3 213 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 TRIM43BA6NCK2 446 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 GCOM1H8Y6P7 765 aaPredicted RBP11.12□□□□□ -0.63
VPS39-214ENST00000614932 LSM1O15116 133 aaKnown RBP11.12□□□□□ -0.63
VPS39-214ENST00000614932 P4HA2O15460 535 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 MYZAPP0CAP1 466 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 PRDX5P30044 214 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 PBX1P40424 430 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 PPP2R2AP63151 447 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 KIF23Q02241 960 aaPredicted RBP11.12□□□□□ -0.63
VPS39-214ENST00000614932 ZNF572Q7Z3I7 529 aaPredicted RBP11.12□□□□□ -0.63
VPS39-214ENST00000614932 ZNF384Q8TF68 577 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 HIC2Q96JB3 615 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 NLRP3Q96P20 1036 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 TIPINQ9BVW5 301 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 NACAP1Q9BZK3 213 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 CROTQ9UKG9 612 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 MTMR7Q9Y216 660 aa11.12□□□□□ -0.63
VPS39-214ENST00000614932 COL22A1Q8NFW1 1626 aaPredicted RBP11.11□□□□□ -0.63
VPS39-214ENST00000614932 EIF3FO00303 357 aaPredicted RBP11.11□□□□□ -0.63
VPS39-214ENST00000614932 CETN3O15182 167 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 TROVE2P10155 538 aaKnown RBP eCLIP11.11□□□□□ -0.63
VPS39-214ENST00000614932 RARAP10276 462 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 SERPINB4P48594 390 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 FXR1P51114 621 aaKnown RBP eCLIP11.11□□□□□ -0.63
VPS39-214ENST00000614932 ZNF131P52739 623 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 RPS8P62241 208 aaKnown RBP11.11□□□□□ -0.63
VPS39-214ENST00000614932 PPARAQ07869 468 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 LSAMPQ13449 338 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 TCERG1LQ5VWI1 586 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 TRIM11Q96F44 468 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 ECT2Q9H8V3 914 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 POLR3EQ9NVU0 708 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 UBAP1Q9NZ09 502 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 STK38LQ9Y2H1 464 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 COL1A1P02452 1464 aaPredicted RBP11.11□□□□□ -0.63
VPS39-214ENST00000614932 BCL9LQ86UU0 1499 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 hCG_2014768A0A024R1R8 64 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 ASAP2O43150 1006 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 HOXA10P31260 410 aaPredicted RBP11.11□□□□□ -0.63
VPS39-214ENST00000614932 STIP1P31948 543 aaKnown RBP11.11□□□□□ -0.63
VPS39-214ENST00000614932 BIRC3Q13489 604 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 WTAPQ15007 396 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 CNPY1Q3B7I2 92 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 SLC44A4Q53GD3 710 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 RASIP1Q5U651 963 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 THOC7Q6I9Y2 204 aaKnown RBP11.11□□□□□ -0.63
VPS39-214ENST00000614932 KLHL10Q6JEL2 608 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 IFT20Q8IY31 132 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 LRRC43Q8N309 656 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 SNRNP27Q8WVK2 155 aaKnown RBP11.11□□□□□ -0.63
VPS39-214ENST00000614932 KLHL29Q96CT2 875 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 JADE2Q9NQC1 790 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 CTTNBP2NLQ9P2B4 639 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 DACH1Q9UI36 760 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 PLAAQ9Y263 795 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 R3HDM2Q9Y2K5 976 aaKnown RBP11.11□□□□□ -0.63
VPS39-214ENST00000614932 RTCBQ9Y3I0 505 aaKnown RBP11.11□□□□□ -0.63
VPS39-214ENST00000614932 EPN1Q9Y6I3 576 aaPredicted RBP11.11□□□□□ -0.63
VPS39-214ENST00000614932 MYH7P12883 1935 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 MYH8P13535 1937 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 NRAPQ86VF7 1730 aa11.11□□□□□ -0.63
VPS39-214ENST00000614932 ATP9BO43861 1147 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms