RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 CWF19L1Q69YN2 538 aaKnown RBP6.18□□□□□ -1.42
LINC00540-201ENST00000611481 FBXO33Q7Z6M2 555 aa6.18□□□□□ -1.42
LINC00540-201ENST00000611481 REXO1Q8N1G1 1221 aaKnown RBP6.18□□□□□ -1.42
LINC00540-201ENST00000611481 TTLL6Q8N841 843 aa6.18□□□□□ -1.42
LINC00540-201ENST00000611481 FNIP1Q8TF40 1166 aa6.18□□□□□ -1.42
LINC00540-201ENST00000611481 DSCC1Q9BVC3 393 aa6.18□□□□□ -1.42
LINC00540-201ENST00000611481 ANTXR1Q9H6X2 564 aa6.18□□□□□ -1.42
LINC00540-201ENST00000611481 PMF1-BGLAPU3KQ54 211 aa6.18□□□□□ -1.42
LINC00540-201ENST00000611481 ADAMTSL1Q8N6G6 1762 aa6.18□□□□□ -1.42
LINC00540-201ENST00000611481 DICER1Q9UPY3 1922 aaKnown RBP6.17□□□□□ -1.42
LINC00540-201ENST00000611481 E9PSI1 815 aa6.17□□□□□ -1.42
LINC00540-201ENST00000611481 TRAF5O00463 557 aa6.17□□□□□ -1.42
LINC00540-201ENST00000611481 DBHP09172 617 aa6.17□□□□□ -1.42
LINC00540-201ENST00000611481 GSTM1P09488 218 aa6.17□□□□□ -1.42
LINC00540-201ENST00000611481 FBLN1P23142 703 aa6.17□□□□□ -1.42
LINC00540-201ENST00000611481 RFC4P35249 363 aa6.17□□□□□ -1.42
LINC00540-201ENST00000611481 CRKP46108 304 aa6.17□□□□□ -1.42
LINC00540-201ENST00000611481 CLCQ05315 142 aa6.17□□□□□ -1.42
LINC00540-201ENST00000611481 ITPK1Q13572 414 aa6.17□□□□□ -1.42
LINC00540-201ENST00000611481 BICRALQ6AI39 1079 aa6.17□□□□□ -1.42
LINC00540-201ENST00000611481 GK5Q6ZS86 529 aa6.17□□□□□ -1.42
LINC00540-201ENST00000611481 PNMA8AQ86V59 439 aaPredicted RBP6.17□□□□□ -1.42
LINC00540-201ENST00000611481 ZNF296Q8WUU4 475 aaPredicted RBP6.17□□□□□ -1.42
LINC00540-201ENST00000611481 LTV1Q96GA3 475 aaPredicted RBP6.17□□□□□ -1.42
LINC00540-201ENST00000611481 SPATA25Q9BR10 227 aa6.17□□□□□ -1.42
LINC00540-201ENST00000611481 RNF38Q9H0F5 515 aa6.17□□□□□ -1.42
LINC00540-201ENST00000611481 FAN1Q9Y2M0 1017 aa6.17□□□□□ -1.42
LINC00540-201ENST00000611481 CEP290O15078 2479 aa6.16□□□□□ -1.42
LINC00540-201ENST00000611481 A0A1B0GTL3 188 aa6.16□□□□□ -1.42
LINC00540-201ENST00000611481 MEIS3P2A8K0S8 358 aa6.16□□□□□ -1.42
LINC00540-201ENST00000611481 TNFRSF10CO14798 259 aa6.16□□□□□ -1.42
LINC00540-201ENST00000611481 PLA2G1BP04054 148 aaKnown RBP6.16□□□□□ -1.42
LINC00540-201ENST00000611481 ATF2P15336 505 aa6.16□□□□□ -1.42
LINC00540-201ENST00000611481 SEZ6Q53EL9 994 aa6.16□□□□□ -1.42
LINC00540-201ENST00000611481 SAPCD2Q86UD0 394 aa6.16□□□□□ -1.42
LINC00540-201ENST00000611481 FERMT3Q86UX7 667 aa6.16□□□□□ -1.42
LINC00540-201ENST00000611481 C7orf61Q8IZ16 206 aa6.16□□□□□ -1.42
LINC00540-201ENST00000611481 ADGRG2Q8IZP9 1017 aa6.16□□□□□ -1.42
LINC00540-201ENST00000611481 DHRS1Q96LJ7 313 aa6.16□□□□□ -1.42
LINC00540-201ENST00000611481 SLC12A9Q9BXP2 914 aa6.16□□□□□ -1.42
LINC00540-201ENST00000611481 PDLIM7Q9NR12 457 aa6.16□□□□□ -1.42
LINC00540-201ENST00000611481 RNF123Q5XPI4 1314 aa6.16□□□□□ -1.42
LINC00540-201ENST00000611481 MKI67P46013 3256 aaKnown RBP6.16□□□□□ -1.42
LINC00540-201ENST00000611481 SH3D21A4FU49 640 aa6.15□□□□□ -1.42
LINC00540-201ENST00000611481 MCM4P33991 863 aa6.15□□□□□ -1.42
LINC00540-201ENST00000611481 PLA2G5P39877 138 aa6.15□□□□□ -1.42
LINC00540-201ENST00000611481 ZNF165P49910 485 aa6.15□□□□□ -1.42
LINC00540-201ENST00000611481 CYP2R1Q6VVX0 501 aa6.15□□□□□ -1.42
LINC00540-201ENST00000611481 DNAJC14Q6Y2X3 702 aaPredicted RBP6.15□□□□□ -1.42
LINC00540-201ENST00000611481 TAOK3Q9H2K8 898 aa6.15□□□□□ -1.42
LINC00540-201ENST00000611481 SUCOQ9UBS9 1254 aaKnown RBP6.15□□□□□ -1.42
LINC00540-201ENST00000611481 HCFC2Q9Y5Z7 792 aa6.15□□□□□ -1.42
LINC00540-201ENST00000611481 TTC21BQ7Z4L5 1316 aa6.15□□□□□ -1.43
LINC00540-201ENST00000611481 TRPM7Q96QT4 1865 aa6.14□□□□□ -1.43
LINC00540-201ENST00000611481 F8W031 263 aaPredicted RBP6.14□□□□□ -1.43
LINC00540-201ENST00000611481 H0YGN5 161 aa6.14□□□□□ -1.43
LINC00540-201ENST00000611481 CELF2O95319 508 aaKnown RBP6.14□□□□□ -1.43
LINC00540-201ENST00000611481 NCAM1P13591 858 aa6.14□□□□□ -1.43
LINC00540-201ENST00000611481 MAGEA10P43363 369 aaPredicted RBP6.14□□□□□ -1.43
LINC00540-201ENST00000611481 CORO7P57737 925 aa6.14□□□□□ -1.43
LINC00540-201ENST00000611481 PRR5P85299 388 aa6.14□□□□□ -1.43
LINC00540-201ENST00000611481 APOBRQ0VD83 1088 aa6.14□□□□□ -1.43
LINC00540-201ENST00000611481 NOGQ13253 232 aa6.14□□□□□ -1.43
LINC00540-201ENST00000611481 PKN2Q16513 984 aaKnown RBP6.14□□□□□ -1.43
LINC00540-201ENST00000611481 C2CD5Q86YS7 1000 aa6.14□□□□□ -1.43
LINC00540-201ENST00000611481 CCDC144CPQ8IYA2 1237 aa6.14□□□□□ -1.43
LINC00540-201ENST00000611481 PIGBQ92521 554 aa6.14□□□□□ -1.43
LINC00540-201ENST00000611481 FAM122AQ96E09 287 aa6.14□□□□□ -1.43
LINC00540-201ENST00000611481 SLC9A7Q96T83 725 aa6.14□□□□□ -1.43
LINC00540-201ENST00000611481 SRRTQ9BXP5 876 aaKnown RBP6.14□□□□□ -1.43
LINC00540-201ENST00000611481 RNF186Q9NXI6 227 aa6.14□□□□□ -1.43
LINC00540-201ENST00000611481 SAGE1Q9NXZ1 904 aa6.14□□□□□ -1.43
LINC00540-201ENST00000611481 UBP1Q9NZI7 540 aa6.14□□□□□ -1.43
LINC00540-201ENST00000611481 SRP68Q9UHB9 627 aaKnown RBP6.14□□□□□ -1.43
LINC00540-201ENST00000611481 DBR1Q9UK59 544 aaKnown RBP6.14□□□□□ -1.43
LINC00540-201ENST00000611481 ZNF541Q9H0D2 1346 aa6.14□□□□□ -1.43
LINC00540-201ENST00000611481 CACNA1AO00555 2505 aa6.14□□□□□ -1.43
LINC00540-201ENST00000611481 MAP2P11137 1827 aaKnown RBP6.13□□□□□ -1.43
LINC00540-201ENST00000611481 POLRMTO00411 1230 aaKnown RBP6.13□□□□□ -1.43
LINC00540-201ENST00000611481 FGF10O15520 208 aaPredicted RBP6.13□□□□□ -1.43
LINC00540-201ENST00000611481 NOP2P46087 812 aaKnown RBP6.13□□□□□ -1.43
LINC00540-201ENST00000611481 SYNE4Q8N205 404 aa6.13□□□□□ -1.43
LINC00540-201ENST00000611481 HDAC9Q9UKV0 1011 aa6.13□□□□□ -1.43
LINC00540-201ENST00000611481 PLA2G2DQ9UNK4 145 aa6.13□□□□□ -1.43
LINC00540-201ENST00000611481 LTN1O94822 1766 aa6.13□□□□□ -1.43
LINC00540-201ENST00000611481 H0YIN7 160 aa6.12□□□□□ -1.43
LINC00540-201ENST00000611481 SHOXO15266 292 aa6.12□□□□□ -1.43
LINC00540-201ENST00000611481 NOBOXO60393 691 aa6.12□□□□□ -1.43
LINC00540-201ENST00000611481 GJA9P57773 515 aa6.12□□□□□ -1.43
LINC00540-201ENST00000611481 NOL9Q5SY16 702 aaKnown RBP6.12□□□□□ -1.43
LINC00540-201ENST00000611481 INTS3Q68E01 1043 aaKnown RBP6.12□□□□□ -1.43
LINC00540-201ENST00000611481 B3GNT8Q7Z7M8 397 aa6.12□□□□□ -1.43
LINC00540-201ENST00000611481 DDX1Q92499 740 aaKnown RBP6.12□□□□□ -1.43
LINC00540-201ENST00000611481 ZNF622Q969S3 477 aaKnown RBP eCLIP6.12□□□□□ -1.43
LINC00540-201ENST00000611481 ZNF428Q96B54 188 aa6.12□□□□□ -1.43
LINC00540-201ENST00000611481 SNX27Q96L92 541 aa6.12□□□□□ -1.43
LINC00540-201ENST00000611481 ZNF408Q9H9D4 720 aa6.12□□□□□ -1.43
LINC00540-201ENST00000611481 ADAMTS1Q9UHI8 967 aa6.12□□□□□ -1.43
LINC00540-201ENST00000611481 DLEC1Q9Y238 1755 aa6.12□□□□□ -1.43
LINC00540-201ENST00000611481 FER1L6Q2WGJ9 1857 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms