RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 UBE3AQ05086 875 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 PPFIA1Q13136 1202 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 GRM4Q14833 912 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 WTAPQ15007 396 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 PCNX4Q63HM2 1172 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 PDE12Q6L8Q7 609 aaKnown RBP7.24□□□□□ -1.25
CUX1-220ENST00000607092 TSHZ1Q6ZSZ6 1077 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 CYFIP1Q7L576 1253 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 CHD1LQ86WJ1 897 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 SMC5Q8IY18 1101 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 CMTR2Q8IYT2 770 aaKnown RBP7.24□□□□□ -1.25
CUX1-220ENST00000607092 TMTC2Q8N394 836 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 CTCFLQ8NI51 663 aaPredicted RBP7.24□□□□□ -1.25
CUX1-220ENST00000607092 SEPT1Q8WYJ6 367 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 EDAQ92838 391 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 WNT8BQ93098 351 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 RRP36Q96EU6 259 aaKnown RBP7.24□□□□□ -1.25
CUX1-220ENST00000607092 CDCA3Q99618 268 aaPredicted RBP7.24□□□□□ -1.25
CUX1-220ENST00000607092 LNPKQ9C0E8 428 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 SMARCAD1Q9H4L7 1026 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 AZI2Q9H6S1 392 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 AAASQ9NRG9 546 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 SETD4Q9NVD3 440 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 TUBE1Q9UJT0 475 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 GVINP1Q7Z2Y8 2422 aa7.24□□□□□ -1.25
CUX1-220ENST00000607092 MYH6P13533 1939 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 CARNS1A5YM72 827 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 STXBP3O00186 592 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 MBTPS2O43462 519 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 EYA4O95677 639 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 IRS1P35568 1242 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 TCF7P36402 384 aaPredicted RBP7.23□□□□□ -1.25
CUX1-220ENST00000607092 SLC26A2P50443 739 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 ADAM17P78536 824 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 FOXK2Q01167 660 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 SP2Q02086 613 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 SEC23AQ15436 765 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 TCTN1Q2MV58 587 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 UTP14CQ5TAP6 766 aaKnown RBP7.23□□□□□ -1.25
CUX1-220ENST00000607092 NPAS4Q8IUM7 802 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 ZNF710Q8N1W2 664 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 STAG2Q8N3U4 1231 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 NME8Q8N427 588 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 EFHBQ8N7U6 833 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 NCOA7Q8NI08 942 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 LMBR1Q8WVP7 490 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 GLG1Q92896 1179 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 FBXL18Q96ME1 805 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 PIGSQ96S52 555 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 SPZ1Q9BXG8 430 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 PCDHB12Q9Y5F1 795 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 GTF3C3Q9Y5Q9 886 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 RALGAPA2Q2PPJ7 1873 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 PTPRSQ13332 1948 aa7.23□□□□□ -1.25
CUX1-220ENST00000607092 ZNF292O60281 2723 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 LAMA4Q16363 1823 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 MBLAC1A4D2B0 266 aaPredicted RBP7.22□□□□□ -1.25
CUX1-220ENST00000607092 SPDYE3A6NKU9 549 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 ENPP3O14638 875 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 ST18O60284 1047 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 PPP1R11O60927 126 aaPredicted RBP7.22□□□□□ -1.25
CUX1-220ENST00000607092 DGKIO75912 1065 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 DDAH1O94760 285 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 CALM1P0DP23 149 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 CALM2P0DP24 149 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 CALM3P0DP25 149 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 GHRP10912 638 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 ATF7P17544 494 aaPredicted RBP7.22□□□□□ -1.25
CUX1-220ENST00000607092 FXR2P51116 673 aaKnown RBP eCLIP7.22□□□□□ -1.25
CUX1-220ENST00000607092 MRPS6P82932 125 aaKnown RBP7.22□□□□□ -1.25
CUX1-220ENST00000607092 HYAL1Q12794 435 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 TROAPQ12815 778 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 COASYQ13057 564 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 ADAM15Q13444 863 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 GRIK4Q16099 956 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 FBXO47Q5MNV8 452 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 TRIM67Q6ZTA4 783 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 RNF135Q8IUD6 432 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 IL31RAQ8NI17 732 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 RSPH1Q8WYR4 309 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 ZNF689Q96CS4 500 aaPredicted RBP7.22□□□□□ -1.25
CUX1-220ENST00000607092 KIF12Q96FN5 646 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 GLT8D2Q9H1C3 349 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 RC3H2Q9HBD1 1191 aaKnown RBP7.22□□□□□ -1.25
CUX1-220ENST00000607092 PUF60Q9UHX1 559 aaKnown RBP7.22□□□□□ -1.25
CUX1-220ENST00000607092 LRFN2Q9ULH4 789 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 PLAGL2Q9UPG8 496 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 FAM186AA6NE01 2351 aa7.22□□□□□ -1.25
CUX1-220ENST00000607092 MYH7BA7E2Y1 1941 aa7.21□□□□□ -1.25
CUX1-220ENST00000607092 TULP1O00294 542 aaPredicted RBP7.21□□□□□ -1.26
CUX1-220ENST00000607092 GRM6O15303 877 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 HOXA2O43364 376 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 SORBS3O60504 671 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 CHRNA1P02708 482 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 SCG2P13521 617 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 LTBRP36941 435 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 MRPS9P82933 396 aaKnown RBP7.21□□□□□ -1.26
CUX1-220ENST00000607092 NUCB1Q02818 461 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 MGAT3Q09327 533 aa7.21□□□□□ -1.26
CUX1-220ENST00000607092 PAK2Q13177 524 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms