RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 PTPRSQ13332 1948 aa10.97□□□□□ -0.65
VRK3-224ENST00000601849 GSTTP1A0A1W2PQM5 241 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 ATP9AO75110 1047 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 FOSP01100 380 aaPredicted RBP10.96□□□□□ -0.65
VRK3-224ENST00000601849 KCNA2P16389 499 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 SLC26A2P50443 739 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 MRPS6P82932 125 aaKnown RBP10.96□□□□□ -0.65
VRK3-224ENST00000601849 LPIN1Q14693 890 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 SLC35G1Q2M3R5 365 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 FBXO47Q5MNV8 452 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 RNF20Q5VTR2 975 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 MB21D2Q8IYB1 491 aaPredicted RBP10.96□□□□□ -0.65
VRK3-224ENST00000601849 CCDC82Q8N4S0 544 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 SRBD1Q8N5C6 995 aaKnown RBP10.96□□□□□ -0.65
VRK3-224ENST00000601849 KHSRPQ92945 711 aaKnown RBP eCLIP10.96□□□□□ -0.65
VRK3-224ENST00000601849 CLP1Q92989 425 aaKnown RBP10.96□□□□□ -0.65
VRK3-224ENST00000601849 P2RX5Q93086 422 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 MFSD14AQ96MC6 490 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 MYL10Q9BUA6 226 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 GLT8D2Q9H1C3 349 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 KCNH6Q9H252 994 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 IGFLR1Q9H665 355 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 JPH1Q9HDC5 661 aaPredicted RBP10.96□□□□□ -0.65
VRK3-224ENST00000601849 AAASQ9NRG9 546 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 SLC9A2Q9UBY0 812 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 TRPC6Q9Y210 931 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 CDY2AQ9Y6F7 541 aa10.96□□□□□ -0.65
VRK3-224ENST00000601849 FSD2A1L4K1 749 aa10.95□□□□□ -0.66
VRK3-224ENST00000601849 MBLAC1A4D2B0 266 aaPredicted RBP10.95□□□□□ -0.66
VRK3-224ENST00000601849 DGKIO75912 1065 aa10.95□□□□□ -0.66
VRK3-224ENST00000601849 INSRRP14616 1297 aa10.95□□□□□ -0.66
VRK3-224ENST00000601849 ITGB5P18084 799 aa10.95□□□□□ -0.66
VRK3-224ENST00000601849 ZNF76P36508 570 aa10.95□□□□□ -0.66
VRK3-224ENST00000601849 STAT5BP51692 787 aa10.95□□□□□ -0.66
VRK3-224ENST00000601849 MGAT3Q09327 533 aa10.95□□□□□ -0.66
VRK3-224ENST00000601849 PAK2Q13177 524 aa10.95□□□□□ -0.66
VRK3-224ENST00000601849 SPOUT1Q5T280 376 aaKnown RBP10.95□□□□□ -0.66
VRK3-224ENST00000601849 RUFY4Q6ZNE9 571 aa10.95□□□□□ -0.66
VRK3-224ENST00000601849 PLPPR4Q7Z2D5 763 aa10.95□□□□□ -0.66
VRK3-224ENST00000601849 HEATR3Q7Z4Q2 680 aa10.95□□□□□ -0.66
VRK3-224ENST00000601849 NPAS4Q8IUM7 802 aa10.95□□□□□ -0.66
VRK3-224ENST00000601849 CMTR2Q8IYT2 770 aaKnown RBP10.95□□□□□ -0.66
VRK3-224ENST00000601849 FANCBQ8NB91 859 aa10.95□□□□□ -0.66
VRK3-224ENST00000601849 FAM49AQ9H0Q0 323 aaPredicted RBP10.95□□□□□ -0.66
VRK3-224ENST00000601849 RBM28Q9NW13 759 aaKnown RBP10.95□□□□□ -0.66
VRK3-224ENST00000601849 PKD2L1Q9P0L9 805 aa10.95□□□□□ -0.66
VRK3-224ENST00000601849 PCDHA2Q9Y5H9 948 aa10.95□□□□□ -0.66
VRK3-224ENST00000601849 TRPV2Q9Y5S1 764 aa10.95□□□□□ -0.66
VRK3-224ENST00000601849 UBIAD1Q9Y5Z9 338 aa10.95□□□□□ -0.66
VRK3-224ENST00000601849 COL4A6Q14031 1691 aa10.95□□□□□ -0.66
VRK3-224ENST00000601849 MICAL3Q7RTP6 2002 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 POTEB3A0JP26 581 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 SH2B2O14492 632 aaPredicted RBP10.94□□□□□ -0.66
VRK3-224ENST00000601849 GRM6O15303 877 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 PLEKHA8P1O95397 391 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 MMP1P03956 469 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 PDE4AP27815 886 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 CD52P31358 61 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 NDUFV1P49821 464 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 ANTXR2P58335 489 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 KRT76Q01546 638 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 ZP2Q05996 745 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 COL19A1Q14993 1142 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 SMAD2Q15796 467 aaKnown RBP10.94□□□□□ -0.66
VRK3-224ENST00000601849 CTC1Q2NKJ3 1217 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 FAM160B1Q5W0V3 765 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 POTEBQ6S5H4 581 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 CMTR1Q8N1G2 835 aaKnown RBP10.94□□□□□ -0.66
VRK3-224ENST00000601849 MICAL1Q8TDZ2 1067 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 ZNF689Q96CS4 500 aaPredicted RBP10.94□□□□□ -0.66
VRK3-224ENST00000601849 MXRA8Q9BRK3 442 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 CELF4Q9BZC1 486 aaKnown RBP10.94□□□□□ -0.66
VRK3-224ENST00000601849 C11orf16Q9NQ32 467 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 KCNH7Q9NS40 1196 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 TCEAL9Q9UHQ7 104 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 PLAGL2Q9UPG8 496 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 PCDHB7Q9Y5E2 793 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 PCDHB12Q9Y5F1 795 aa10.94□□□□□ -0.66
VRK3-224ENST00000601849 NFASCO94856 1347 aa10.93□□□□□ -0.66
VRK3-224ENST00000601849 KAT6AQ92794 2004 aa10.93□□□□□ -0.66
VRK3-224ENST00000601849 SMIM35A0A1B0GVV1 85 aa10.93□□□□□ -0.66
VRK3-224ENST00000601849 C19orf67A6NJJ6 358 aa10.93□□□□□ -0.66
VRK3-224ENST00000601849 STXBP3O00186 592 aa10.93□□□□□ -0.66
VRK3-224ENST00000601849 SRGAP2BP0DMP2 458 aa10.93□□□□□ -0.66
VRK3-224ENST00000601849 SCG2P13521 617 aa10.93□□□□□ -0.66
VRK3-224ENST00000601849 NAPAP54920 295 aa10.93□□□□□ -0.66
VRK3-224ENST00000601849 HYAL1Q12794 435 aa10.93□□□□□ -0.66
VRK3-224ENST00000601849 NFX1Q12986 1120 aaKnown RBP10.93□□□□□ -0.66
VRK3-224ENST00000601849 SMAD4Q13485 552 aaKnown RBP10.93□□□□□ -0.66
VRK3-224ENST00000601849 PKN1Q16512 942 aa10.93□□□□□ -0.66
VRK3-224ENST00000601849 UBE2SQ16763 222 aa10.93□□□□□ -0.66
VRK3-224ENST00000601849 MARCH8Q5T0T0 291 aa10.93□□□□□ -0.66
VRK3-224ENST00000601849 MCTP2Q6DN12 878 aa10.93□□□□□ -0.66
VRK3-224ENST00000601849 OSBPL7Q9BZF2 842 aa10.93□□□□□ -0.66
VRK3-224ENST00000601849 ALG13Q9NP73 1137 aaKnown RBP10.93□□□□□ -0.66
VRK3-224ENST00000601849 CD207Q9UJ71 328 aa10.93□□□□□ -0.66
VRK3-224ENST00000601849 PADI3Q9ULW8 664 aa10.93□□□□□ -0.66
VRK3-224ENST00000601849 SUPT16HQ9Y5B9 1047 aaKnown RBP10.93□□□□□ -0.66
VRK3-224ENST00000601849 BAZ2BQ9UIF8 2168 aaKnown RBP10.92□□□□□ -0.66
VRK3-224ENST00000601849 DENND3A2RUS2 1198 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms