RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 DNAJB3Q8WWF6 145 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 TOP1MTQ969P6 601 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 SAMD11Q96NU1 681 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 MYO9BQ13459 2157 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 MICAL3Q7RTP6 2002 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 MBLAC1A4D2B0 266 aaPredicted RBP11.17□□□□□ -0.62
VRK3-216ENST00000599342 RBAK-RBAKDNI3L0D1 243 aa11.17□□□□□ -0.62
VRK3-216ENST00000599342 REC8O95072 547 aa11.17□□□□□ -0.62
VRK3-216ENST00000599342 CHRNA1P02708 482 aa11.17□□□□□ -0.62
VRK3-216ENST00000599342 ARP10275 920 aa11.17□□□□□ -0.62
VRK3-216ENST00000599342 SCG2P13521 617 aa11.17□□□□□ -0.62
VRK3-216ENST00000599342 CPA1P15085 419 aa11.17□□□□□ -0.62
VRK3-216ENST00000599342 HSPA4P34932 840 aa11.17□□□□□ -0.62
VRK3-216ENST00000599342 KCNQ1P51787 676 aa11.17□□□□□ -0.62
VRK3-216ENST00000599342 ACTR2P61160 394 aa11.17□□□□□ -0.62
VRK3-216ENST00000599342 AKAP17AQ02040 695 aaKnown RBP11.17□□□□□ -0.62
VRK3-216ENST00000599342 APOBRQ0VD83 1088 aa11.17□□□□□ -0.62
VRK3-216ENST00000599342 PFKFB3Q16875 520 aaPredicted RBP11.17□□□□□ -0.62
VRK3-216ENST00000599342 CYP2W1Q8TAV3 490 aa11.17□□□□□ -0.62
VRK3-216ENST00000599342 SP7Q8TDD2 431 aaPredicted RBP11.17□□□□□ -0.62
VRK3-216ENST00000599342 BRF1Q92994 677 aa11.17□□□□□ -0.62
VRK3-216ENST00000599342 HLA-CQ95604 372 aa11.17□□□□□ -0.62
VRK3-216ENST00000599342 C17orf80Q9BSJ5 609 aa11.17□□□□□ -0.62
VRK3-216ENST00000599342 OSBPL7Q9BZF2 842 aa11.17□□□□□ -0.62
VRK3-216ENST00000599342 FAM49AQ9H0Q0 323 aaPredicted RBP11.17□□□□□ -0.62
VRK3-216ENST00000599342 AGO4Q9HCK5 861 aaKnown RBP11.17□□□□□ -0.62
VRK3-216ENST00000599342 FAM217BQ9NTX9 383 aaPredicted RBP11.17□□□□□ -0.62
VRK3-216ENST00000599342 TMEM260Q9NX78 707 aa11.17□□□□□ -0.62
VRK3-216ENST00000599342 SIP14410 1827 aa11.16□□□□□ -0.62
VRK3-216ENST00000599342 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.16□□□□□ -0.62
VRK3-216ENST00000599342 DDX39AO00148 427 aaKnown RBP11.16□□□□□ -0.62
VRK3-216ENST00000599342 INSRRP14616 1297 aa11.16□□□□□ -0.62
VRK3-216ENST00000599342 PSMA5P28066 241 aa11.16□□□□□ -0.62
VRK3-216ENST00000599342 ADD1P35611 737 aaKnown RBP11.16□□□□□ -0.62
VRK3-216ENST00000599342 CLK2P49760 499 aaKnown RBP11.16□□□□□ -0.62
VRK3-216ENST00000599342 SLC26A2P50443 739 aa11.16□□□□□ -0.62
VRK3-216ENST00000599342 STAT5BP51692 787 aa11.16□□□□□ -0.62
VRK3-216ENST00000599342 MGAT3Q09327 533 aa11.16□□□□□ -0.62
VRK3-216ENST00000599342 PTPROQ16827 1216 aa11.16□□□□□ -0.62
VRK3-216ENST00000599342 IER5Q5VY09 327 aa11.16□□□□□ -0.62
VRK3-216ENST00000599342 JAKMIP3Q5VZ66 844 aa11.16□□□□□ -0.62
VRK3-216ENST00000599342 MCTP2Q6DN12 878 aa11.16□□□□□ -0.62
VRK3-216ENST00000599342 TSHZ1Q6ZSZ6 1077 aa11.16□□□□□ -0.62
VRK3-216ENST00000599342 NIPA1Q7RTP0 329 aa11.16□□□□□ -0.62
VRK3-216ENST00000599342 PLPPR4Q7Z2D5 763 aa11.16□□□□□ -0.62
VRK3-216ENST00000599342 PCYT2Q99447 389 aa11.16□□□□□ -0.62
VRK3-216ENST00000599342 C6orf50Q9HD87 102 aa11.16□□□□□ -0.62
VRK3-216ENST00000599342 TCEAL9Q9UHQ7 104 aa11.16□□□□□ -0.62
VRK3-216ENST00000599342 SNX14Q9Y5W7 946 aa11.16□□□□□ -0.62
VRK3-216ENST00000599342 CDY2AQ9Y6F7 541 aa11.16□□□□□ -0.62
VRK3-216ENST00000599342 ESYT2A0FGR8 921 aa11.15□□□□□ -0.62
VRK3-216ENST00000599342 POTEB3A0JP26 581 aa11.15□□□□□ -0.62
VRK3-216ENST00000599342 MEIS1O00470 390 aa11.15□□□□□ -0.62
VRK3-216ENST00000599342 BACH1O14867 736 aa11.15□□□□□ -0.62
VRK3-216ENST00000599342 BMP1P13497 986 aa11.15□□□□□ -0.62
VRK3-216ENST00000599342 RPS6KB1P23443 525 aa11.15□□□□□ -0.62
VRK3-216ENST00000599342 GNA11P29992 359 aa11.15□□□□□ -0.62
VRK3-216ENST00000599342 MRPS6P82932 125 aaKnown RBP11.15□□□□□ -0.62
VRK3-216ENST00000599342 SETQ01105 290 aaPredicted RBP11.15□□□□□ -0.62
VRK3-216ENST00000599342 ITGB3BPQ13352 177 aaPredicted RBP11.15□□□□□ -0.62
VRK3-216ENST00000599342 LPIN1Q14693 890 aa11.15□□□□□ -0.62
VRK3-216ENST00000599342 PLCB4Q15147 1175 aa11.15□□□□□ -0.62
VRK3-216ENST00000599342 EPC2Q52LR7 807 aa11.15□□□□□ -0.62
VRK3-216ENST00000599342 FBXO47Q5MNV8 452 aa11.15□□□□□ -0.62
VRK3-216ENST00000599342 MARCH8Q5T0T0 291 aa11.15□□□□□ -0.62
VRK3-216ENST00000599342 FAM160B1Q5W0V3 765 aa11.15□□□□□ -0.62
VRK3-216ENST00000599342 POTEBQ6S5H4 581 aa11.15□□□□□ -0.62
VRK3-216ENST00000599342 PLA2G4DQ86XP0 818 aa11.15□□□□□ -0.62
VRK3-216ENST00000599342 REXO1Q8N1G1 1221 aaKnown RBP11.15□□□□□ -0.62
VRK3-216ENST00000599342 CCDC148Q8NFR7 591 aa11.15□□□□□ -0.62
VRK3-216ENST00000599342 KCNB2Q92953 911 aa11.15□□□□□ -0.62
VRK3-216ENST00000599342 ZMYND12Q9H0C1 365 aa11.15□□□□□ -0.62
VRK3-216ENST00000599342 NID2Q14112 1375 aa11.15□□□□□ -0.63
VRK3-216ENST00000599342 KAT6AQ92794 2004 aa11.14□□□□□ -0.63
VRK3-216ENST00000599342 COL4A6Q14031 1691 aa11.14□□□□□ -0.63
VRK3-216ENST00000599342 FAM86B1E9PN63 330 aa11.14□□□□□ -0.63
VRK3-216ENST00000599342 IPO5O00410 1097 aaKnown RBP11.14□□□□□ -0.63
VRK3-216ENST00000599342 PRPF3O43395 683 aaKnown RBP11.14□□□□□ -0.63
VRK3-216ENST00000599342 FAM86B2P0C5J1 330 aa11.14□□□□□ -0.63
VRK3-216ENST00000599342 TIGD5Q53EQ6 642 aa11.14□□□□□ -0.63
VRK3-216ENST00000599342 MIS18BP1Q6P0N0 1132 aa11.14□□□□□ -0.63
VRK3-216ENST00000599342 TMEM192Q8IY95 271 aa11.14□□□□□ -0.63
VRK3-216ENST00000599342 FBXL16Q8N461 479 aa11.14□□□□□ -0.63
VRK3-216ENST00000599342 FIBCD1Q8N539 461 aa11.14□□□□□ -0.63
VRK3-216ENST00000599342 BICD2Q8TD16 824 aa11.14□□□□□ -0.63
VRK3-216ENST00000599342 TRAPPC12Q8WVT3 735 aa11.14□□□□□ -0.63
VRK3-216ENST00000599342 ZBTB10Q96DT7 871 aa11.14□□□□□ -0.63
VRK3-216ENST00000599342 MRPL38Q96DV4 380 aaKnown RBP11.14□□□□□ -0.63
VRK3-216ENST00000599342 IL17RAQ96F46 866 aa11.14□□□□□ -0.63
VRK3-216ENST00000599342 NECAB3Q96P71 396 aaPredicted RBP11.14□□□□□ -0.63
VRK3-216ENST00000599342 RNF26Q9BY78 433 aaPredicted RBP11.14□□□□□ -0.63
VRK3-216ENST00000599342 RWDD3Q9Y3V2 267 aa11.14□□□□□ -0.63
VRK3-216ENST00000599342 PCDHA2Q9Y5H9 948 aa11.14□□□□□ -0.63
VRK3-216ENST00000599342 TRPV2Q9Y5S1 764 aa11.14□□□□□ -0.63
VRK3-216ENST00000599342 SPTBN5Q9NRC6 3674 aaKnown RBP11.14□□□□□ -0.63
VRK3-216ENST00000599342 PRRC2BQ5JSZ5 2229 aaKnown RBP11.13□□□□□ -0.63
VRK3-216ENST00000599342 ADGRA3Q8IWK6 1321 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 SMIM35A0A1B0GVV1 85 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 H3BNC9 293 aa11.13□□□□□ -0.63
VRK3-216ENST00000599342 HBP1O60381 514 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms