RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ST18O60284 1047 aa18.29■□□□□ 0.52
TRIM28-213ENST00000598355 CAND2O75155 1236 aa18.29■□□□□ 0.52
TRIM28-213ENST00000598355 PARNO95453 639 aaKnown RBP18.29■□□□□ 0.52
TRIM28-213ENST00000598355 SELPP16109 830 aa18.29■□□□□ 0.52
TRIM28-213ENST00000598355 GCFC2P16383 781 aaKnown RBP18.29■□□□□ 0.52
TRIM28-213ENST00000598355 SLC26A2P50443 739 aa18.29■□□□□ 0.52
TRIM28-213ENST00000598355 KRT76Q01546 638 aa18.29■□□□□ 0.52
TRIM28-213ENST00000598355 EARS2Q5JPH6 523 aaKnown RBP18.29■□□□□ 0.52
TRIM28-213ENST00000598355 PPP4R3AQ6IN85 833 aa18.29■□□□□ 0.52
TRIM28-213ENST00000598355 ZNF365Q70YC5 407 aa18.29■□□□□ 0.52
TRIM28-213ENST00000598355 LRRC8DQ7L1W4 858 aa18.29■□□□□ 0.52
TRIM28-213ENST00000598355 RPAINQ86UA6 219 aa18.29■□□□□ 0.52
TRIM28-213ENST00000598355 CCDC60Q8IWA6 550 aaPredicted RBP18.29■□□□□ 0.52
TRIM28-213ENST00000598355 SMAP1Q8IYB5 467 aaPredicted RBP18.29■□□□□ 0.52
TRIM28-213ENST00000598355 ATP6V0A1Q93050 837 aa18.29■□□□□ 0.52
TRIM28-213ENST00000598355 SETD4Q9NVD3 440 aa18.29■□□□□ 0.52
TRIM28-213ENST00000598355 IGSF9BQ9UPX0 1349 aa18.28■□□□□ 0.52
TRIM28-213ENST00000598355 CCDC194A0A1B0GVG4 234 aa18.28■□□□□ 0.52
TRIM28-213ENST00000598355 PSMD10O75832 226 aa18.28■□□□□ 0.52
TRIM28-213ENST00000598355 CXCL10P02778 98 aa18.28■□□□□ 0.52
TRIM28-213ENST00000598355 ACRP10323 421 aa18.28■□□□□ 0.52
TRIM28-213ENST00000598355 GNAT1P11488 350 aa18.28■□□□□ 0.52
TRIM28-213ENST00000598355 KRT2P35908 639 aa18.28■□□□□ 0.52
TRIM28-213ENST00000598355 HMGN5P82970 282 aaKnown RBP18.28■□□□□ 0.52
TRIM28-213ENST00000598355 SMAD3P84022 425 aaKnown RBP18.28■□□□□ 0.52
TRIM28-213ENST00000598355 NR5A1Q13285 461 aa18.28■□□□□ 0.52
TRIM28-213ENST00000598355 KRT40Q6A162 431 aa18.28■□□□□ 0.52
TRIM28-213ENST00000598355 NEK8Q86SG6 692 aa18.28■□□□□ 0.52
TRIM28-213ENST00000598355 RPUSD2Q8IZ73 545 aaKnown RBP18.28■□□□□ 0.52
TRIM28-213ENST00000598355 GLG1Q92896 1179 aa18.28■□□□□ 0.52
TRIM28-213ENST00000598355 AZI2Q9H6S1 392 aa18.28■□□□□ 0.52
TRIM28-213ENST00000598355 KCNMB3Q9NPA1 279 aa18.28■□□□□ 0.52
TRIM28-213ENST00000598355 CDH23Q9H251 3354 aa18.27■□□□□ 0.52
TRIM28-213ENST00000598355 DDX39AO00148 427 aaKnown RBP18.27■□□□□ 0.52
TRIM28-213ENST00000598355 SLC37A4O43826 429 aa18.27■□□□□ 0.52
TRIM28-213ENST00000598355 MARK3P27448 753 aa18.27■□□□□ 0.52
TRIM28-213ENST00000598355 STAT5BP51692 787 aa18.27■□□□□ 0.52
TRIM28-213ENST00000598355 PPFIA1Q13136 1202 aa18.27■□□□□ 0.52
TRIM28-213ENST00000598355 MBTPS1Q14703 1052 aa18.27■□□□□ 0.52
TRIM28-213ENST00000598355 PLCB4Q15147 1175 aa18.27■□□□□ 0.52
TRIM28-213ENST00000598355 GRIK4Q16099 956 aa18.27■□□□□ 0.52
TRIM28-213ENST00000598355 MARCH8Q5T0T0 291 aa18.27■□□□□ 0.52
TRIM28-213ENST00000598355 PIK3AP1Q6ZUJ8 805 aa18.27■□□□□ 0.52
TRIM28-213ENST00000598355 RETREG2Q8NC44 543 aa18.27■□□□□ 0.52
TRIM28-213ENST00000598355 BRMS1Q9HCU9 246 aa18.27■□□□□ 0.52
TRIM28-213ENST00000598355 ARID2Q68CP9 1835 aa18.26■□□□□ 0.51
TRIM28-213ENST00000598355 FAM205CA6NFA0 338 aa18.26■□□□□ 0.51
TRIM28-213ENST00000598355 ZNF618Q5T7W0 954 aa18.26■□□□□ 0.51
TRIM28-213ENST00000598355 MIS18BP1Q6P0N0 1132 aa18.26■□□□□ 0.51
TRIM28-213ENST00000598355 DIS3L2Q8IYB7 885 aaKnown RBP18.26■□□□□ 0.51
TRIM28-213ENST00000598355 CXXC1Q9P0U4 656 aaPredicted RBP18.26■□□□□ 0.51
TRIM28-213ENST00000598355 DDX25Q9UHL0 483 aaKnown RBP18.26■□□□□ 0.51
TRIM28-213ENST00000598355 MAFBQ9Y5Q3 323 aaPredicted RBP18.26■□□□□ 0.51
TRIM28-213ENST00000598355 RRN3P2A6NIE6 340 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 WDR64B1ANS9 1081 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 BTBD18B2RXH4 712 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 GAS7O60861 476 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 NBNO60934 754 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 FGBP02675 491 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 ATP4AP20648 1035 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 MCM2P49736 904 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 LETM2Q2VYF4 491 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 FAM26DQ5JW98 314 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 LRCH2Q5VUJ6 765 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 FAM160B1Q5W0V3 765 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 FAM109BQ6ICB4 259 aaPredicted RBP18.25■□□□□ 0.51
TRIM28-213ENST00000598355 TAF2Q6P1X5 1199 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 RDM1Q8NG50 284 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 ATP8B4Q8TF62 1192 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 TMX3Q96JJ7 454 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 UIMC1Q96RL1 719 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 NAP1L4Q99733 375 aaKnown RBP18.25■□□□□ 0.51
TRIM28-213ENST00000598355 TEKT3Q9BXF9 490 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 ZNF302Q9NR11 478 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 TUBE1Q9UJT0 475 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 PCDHA10Q9Y5I2 948 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 CHD9Q3L8U1 2897 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 COL1A2P08123 1366 aa18.25■□□□□ 0.51
TRIM28-213ENST00000598355 POTEB3A0JP26 581 aa18.24■□□□□ 0.51
TRIM28-213ENST00000598355 ZBTB42B2RXF5 422 aa18.24■□□□□ 0.51
TRIM28-213ENST00000598355 TBX3O15119 743 aa18.24■□□□□ 0.51
TRIM28-213ENST00000598355 INSRRP14616 1297 aa18.24■□□□□ 0.51
TRIM28-213ENST00000598355 SFNP31947 248 aa18.24■□□□□ 0.51
TRIM28-213ENST00000598355 MKRN4PQ13434 485 aaPredicted RBP18.24■□□□□ 0.51
TRIM28-213ENST00000598355 TRIM29Q14134 588 aa18.24■□□□□ 0.51
TRIM28-213ENST00000598355 POTEBQ6S5H4 581 aa18.24■□□□□ 0.51
TRIM28-213ENST00000598355 FBXO18Q8NFZ0 1043 aa18.24■□□□□ 0.51
TRIM28-213ENST00000598355 GJA10Q969M2 543 aa18.24■□□□□ 0.51
TRIM28-213ENST00000598355 MTIF3Q9H2K0 278 aaKnown RBP18.24■□□□□ 0.51
TRIM28-213ENST00000598355 UNC45AQ9H3U1 944 aa18.24■□□□□ 0.51
TRIM28-213ENST00000598355 TCEAL9Q9UHQ7 104 aa18.24■□□□□ 0.51
TRIM28-213ENST00000598355 HBP1O60381 514 aa18.23■□□□□ 0.51
TRIM28-213ENST00000598355 BAIAP3O94812 1187 aa18.23■□□□□ 0.51
TRIM28-213ENST00000598355 PSAPP07602 524 aa18.23■□□□□ 0.51
TRIM28-213ENST00000598355 JAK3P52333 1124 aa18.23■□□□□ 0.51
TRIM28-213ENST00000598355 SWSAP1Q6NVH7 229 aa18.23■□□□□ 0.51
TRIM28-213ENST00000598355 PDXDC2PQ6P474 469 aa18.23■□□□□ 0.51
TRIM28-213ENST00000598355 RUFY4Q6ZNE9 571 aa18.23■□□□□ 0.51
TRIM28-213ENST00000598355 OTOP2Q7RTS6 562 aa18.23■□□□□ 0.51
TRIM28-213ENST00000598355 DEFB128Q7Z7B8 93 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms