RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 CLDND1Q9NY35 253 aa14.36□□□□□ -0.11
TRIM28-212ENST00000597995 TUBE1Q9UJT0 475 aa14.36□□□□□ -0.11
TRIM28-212ENST00000597995 UBIAD1Q9Y5Z9 338 aa14.36□□□□□ -0.11
TRIM28-212ENST00000597995 SQORQ9Y6N5 450 aa14.36□□□□□ -0.11
TRIM28-212ENST00000597995 ADGRA3Q8IWK6 1321 aa14.36□□□□□ -0.11
TRIM28-212ENST00000597995 TTC3P53804 2025 aa14.36□□□□□ -0.11
TRIM28-212ENST00000597995 RRN3P2A6NIE6 340 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 C19orf67A6NJJ6 358 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 DCXO43602 365 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 CALM1P0DP23 149 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 CALM2P0DP24 149 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 CALM3P0DP25 149 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 LTBRP36941 435 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 ZP2Q05996 745 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 MTMR1Q13613 665 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 MARCH8Q5T0T0 291 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 TSHZ1Q6ZSZ6 1077 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 EP400NLQ6ZTU2 488 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 ADHFE1Q8IWW8 467 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 GLG1Q92896 1179 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 TNPO1Q92973 898 aaKnown RBP14.35□□□□□ -0.11
TRIM28-212ENST00000597995 TMEM87BQ96K49 555 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 MYL10Q9BUA6 226 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 UPF3BQ9BZI7 483 aaKnown RBP14.35□□□□□ -0.11
TRIM28-212ENST00000597995 ANO2Q9NQ90 1003 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 JADE2Q9NQC1 790 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 MUC6Q6W4X9 2439 aa14.35□□□□□ -0.11
TRIM28-212ENST00000597995 CCDC69A6NI79 296 aa14.34□□□□□ -0.11
TRIM28-212ENST00000597995 GRM6O15303 877 aa14.34□□□□□ -0.11
TRIM28-212ENST00000597995 PRC1O43663 620 aa14.34□□□□□ -0.11
TRIM28-212ENST00000597995 DGKIO75912 1065 aa14.34□□□□□ -0.11
TRIM28-212ENST00000597995 PLEKHA8P1O95397 391 aa14.34□□□□□ -0.11
TRIM28-212ENST00000597995 MARK3P27448 753 aa14.34□□□□□ -0.11
TRIM28-212ENST00000597995 MCM5P33992 734 aa14.34□□□□□ -0.11
TRIM28-212ENST00000597995 BTG3Q14201 252 aaPredicted RBP14.34□□□□□ -0.11
TRIM28-212ENST00000597995 CSPP1Q1MSJ5 1256 aa14.34□□□□□ -0.11
TRIM28-212ENST00000597995 IER5Q5VY09 327 aa14.34□□□□□ -0.11
TRIM28-212ENST00000597995 NFXL1Q6ZNB6 911 aa14.34□□□□□ -0.11
TRIM28-212ENST00000597995 FAM43BQ6ZT52 329 aaPredicted RBP14.34□□□□□ -0.11
TRIM28-212ENST00000597995 DNAJB3Q8WWF6 145 aa14.34□□□□□ -0.11
TRIM28-212ENST00000597995 FTHL17Q9BXU8 183 aa14.34□□□□□ -0.11
TRIM28-212ENST00000597995 CDY2AQ9Y6F7 541 aa14.34□□□□□ -0.11
TRIM28-212ENST00000597995 PIEZO1Q92508 2521 aa14.34□□□□□ -0.11
TRIM28-212ENST00000597995 SPDYE3A6NKU9 549 aa14.33□□□□□ -0.12
TRIM28-212ENST00000597995 SH2B2O14492 632 aaPredicted RBP14.33□□□□□ -0.12
TRIM28-212ENST00000597995 MMP1P03956 469 aa14.33□□□□□ -0.12
TRIM28-212ENST00000597995 LIFRP42702 1097 aa14.33□□□□□ -0.12
TRIM28-212ENST00000597995 MRPS6P82932 125 aaKnown RBP14.33□□□□□ -0.12
TRIM28-212ENST00000597995 HYAL1Q12794 435 aa14.33□□□□□ -0.12
TRIM28-212ENST00000597995 SMAD2Q15796 467 aaKnown RBP14.33□□□□□ -0.12
TRIM28-212ENST00000597995 NAALADL2Q58DX5 795 aa14.33□□□□□ -0.12
TRIM28-212ENST00000597995 TEX2Q8IWB9 1127 aa14.33□□□□□ -0.12
TRIM28-212ENST00000597995 CRIPAKQ8N1N5 446 aa14.33□□□□□ -0.12
TRIM28-212ENST00000597995 P2RX5Q93086 422 aa14.33□□□□□ -0.12
TRIM28-212ENST00000597995 CCDC136Q96JN2 1154 aa14.33□□□□□ -0.12
TRIM28-212ENST00000597995 KCNH6Q9H252 994 aa14.33□□□□□ -0.12
TRIM28-212ENST00000597995 AGO3Q9H9G7 860 aaKnown RBP14.33□□□□□ -0.12
TRIM28-212ENST00000597995 PCDHA6Q9UN73 950 aa14.33□□□□□ -0.12
TRIM28-212ENST00000597995 PCDHA8Q9Y5H6 950 aa14.33□□□□□ -0.12
TRIM28-212ENST00000597995 INSRRP14616 1297 aa14.32□□□□□ -0.12
TRIM28-212ENST00000597995 RTN4RL1Q86UN2 441 aaPredicted RBP14.32□□□□□ -0.12
TRIM28-212ENST00000597995 NPAS4Q8IUM7 802 aa14.32□□□□□ -0.12
TRIM28-212ENST00000597995 CMTR2Q8IYT2 770 aaKnown RBP14.32□□□□□ -0.12
TRIM28-212ENST00000597995 RASEFQ8IZ41 740 aa14.32□□□□□ -0.12
TRIM28-212ENST00000597995 PCYT2Q99447 389 aa14.32□□□□□ -0.12
TRIM28-212ENST00000597995 POP1Q99575 1024 aaKnown RBP14.32□□□□□ -0.12
TRIM28-212ENST00000597995 LRRC2Q9BYS8 371 aa14.32□□□□□ -0.12
TRIM28-212ENST00000597995 AZI2Q9H6S1 392 aa14.32□□□□□ -0.12
TRIM28-212ENST00000597995 JPH1Q9HDC5 661 aaPredicted RBP14.32□□□□□ -0.12
TRIM28-212ENST00000597995 PLAGL2Q9UPG8 496 aa14.32□□□□□ -0.12
TRIM28-212ENST00000597995 PCDHA2Q9Y5H9 948 aa14.32□□□□□ -0.12
TRIM28-212ENST00000597995 M0QZ92 97 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 MBTPS2O43462 519 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 CDC45O75419 566 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 STAG3L1P0CL83 205 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 CD52P31358 61 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 IGBP1P78318 339 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 DLX2Q07687 328 aaPredicted RBP14.31□□□□□ -0.12
TRIM28-212ENST00000597995 ADAM15Q13444 863 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 SMAD4Q13485 552 aaKnown RBP14.31□□□□□ -0.12
TRIM28-212ENST00000597995 UBE2SQ16763 222 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 ADCK5Q3MIX3 580 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 PLPPR4Q7Z2D5 763 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 CMTR1Q8N1G2 835 aaKnown RBP14.31□□□□□ -0.12
TRIM28-212ENST00000597995 NME8Q8N427 588 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 FANCBQ8NB91 859 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 LINC01599Q8WXQ3 324 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 PPP2R3CQ969Q6 453 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 UIMC1Q96RL1 719 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 MXRA8Q9BRK3 442 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 SLC9A2Q9UBY0 812 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 TRPV2Q9Y5S1 764 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 SLC12A7Q9Y666 1083 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 NFASCO94856 1347 aa14.31□□□□□ -0.12
TRIM28-212ENST00000597995 RXRAP19793 462 aa14.3□□□□□ -0.12
TRIM28-212ENST00000597995 IRS1P35568 1242 aa14.3□□□□□ -0.12
TRIM28-212ENST00000597995 EXOSC10Q01780 885 aaKnown RBP14.3□□□□□ -0.12
TRIM28-212ENST00000597995 CAMK1Q14012 370 aa14.3□□□□□ -0.12
TRIM28-212ENST00000597995 TMTC3Q6ZXV5 915 aa14.3□□□□□ -0.12
TRIM28-212ENST00000597995 RAB11FIP4Q86YS3 637 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms