RNA–Protein interactions for RNA: ENST00000594399.1

USE1-204, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 613 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-204ENST00000594399 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.16□□□□□ -0.46
USE1-204ENST00000594399 NT5C3AQ9H0P0 336 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 UPF3AQ9H1J1 476 aaKnown RBP12.16□□□□□ -0.46
USE1-204ENST00000594399 SPC25Q9HBM1 224 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 XPNPEP3Q9NQH7 507 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 CCDC39Q9UFE4 941 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 HPSEQ9Y251 543 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 TELO2Q9Y4R8 837 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 CENPFP49454 3210 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 GSTTP1A0A1W2PQM5 241 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 POTEB3A0JP26 581 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 DKC1O60832 514 aaKnown RBP eCLIP12.15□□□□□ -0.46
USE1-204ENST00000594399 MED24O75448 989 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 MBD3O95983 291 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 P4HBP07237 508 aaKnown RBP12.15□□□□□ -0.46
USE1-204ENST00000594399 C6orf222P0C671 652 aaPredicted RBP12.15□□□□□ -0.46
USE1-204ENST00000594399 HOXD8P13378 290 aaPredicted RBP12.15□□□□□ -0.46
USE1-204ENST00000594399 PLCG1P19174 1290 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 MUTP22033 750 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 QARSP47897 775 aaKnown RBP12.15□□□□□ -0.46
USE1-204ENST00000594399 NDUFA8P51970 172 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 GJA9P57773 515 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 FAM160A1Q05DH4 1040 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 KARSQ15046 597 aaKnown RBP12.15□□□□□ -0.46
USE1-204ENST00000594399 ZRSR1Q15695 479 aaKnown RBP12.15□□□□□ -0.46
USE1-204ENST00000594399 DGKDQ16760 1214 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 TMEM119Q4V9L6 283 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 HYIQ5T013 277 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 FAM160B1Q5W0V3 765 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 POTEBQ6S5H4 581 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 CATSPER3Q86XQ3 398 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 CCDC60Q8IWA6 550 aaPredicted RBP12.15□□□□□ -0.46
USE1-204ENST00000594399 BANK1Q8NDB2 785 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 HSD17B14Q9BPX1 270 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 AZI2Q9H6S1 392 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 ZNF302Q9NR11 478 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 RGL1Q9NZL6 768 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 KCNH3Q9ULD8 1083 aa12.15□□□□□ -0.46
USE1-204ENST00000594399 A0A087X0B3 334 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 IGKV6D-21A0A0A0MT36 114 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 POTEFA5A3E0 1075 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 A6NJR5 290 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 PPFIA4O75335 1185 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 LGR5O75473 907 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 SLITRK3O94933 977 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 SPATA31C1P0DKV0 1188 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 LIG1P18858 919 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 STAT6P42226 847 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 SYKP43405 635 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 PSMC5P62195 406 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 NKX3-2P78367 333 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 GRB10Q13322 594 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 CTTNQ14247 550 aaKnown RBP12.14□□□□□ -0.47
USE1-204ENST00000594399 NFKBIBQ15653 356 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 FSCN1Q16658 493 aaKnown RBP12.14□□□□□ -0.47
USE1-204ENST00000594399 UGCGQ16739 394 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 UTP14CQ5TAP6 766 aaKnown RBP12.14□□□□□ -0.47
USE1-204ENST00000594399 RRAGBQ5VZM2 374 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 SWSAP1Q6NVH7 229 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 PDXDC2PQ6P474 469 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 POTEGQ6S5H5 508 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 KCTD17Q8N5Z5 321 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 PDILTQ8N807 584 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 AFAP1L1Q8TED9 768 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 DHX58Q96C10 678 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 PNMA5Q96PV4 448 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 UNC93B1Q9H1C4 597 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 ZSWIM4Q9H7M6 989 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 DDX19AQ9NUU7 478 aaKnown RBP12.14□□□□□ -0.47
USE1-204ENST00000594399 GABBR1Q9UBS5 961 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 ZNF215Q9UL58 517 aaPredicted RBP12.14□□□□□ -0.47
USE1-204ENST00000594399 KIAA1024Q9UPX6 916 aa12.14□□□□□ -0.47
USE1-204ENST00000594399 MYADML2A6NDP7 307 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 POLR2DO15514 142 aaKnown RBP12.13□□□□□ -0.47
USE1-204ENST00000594399 ZEB2O60315 1214 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 KINO60870 393 aaKnown RBP12.13□□□□□ -0.47
USE1-204ENST00000594399 ADAMTS4O75173 837 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 NR1I2O75469 434 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 LYPLA2O95372 231 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 PGK1P00558 417 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 MYCP01106 439 aaPredicted RBP12.13□□□□□ -0.47
USE1-204ENST00000594399 LGALS2P05162 132 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 ZNF286BP0CG31 522 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 CCL5P13501 91 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 CST5P28325 142 aaPredicted RBP12.13□□□□□ -0.47
USE1-204ENST00000594399 STAT5BP51692 787 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 BEX3Q00994 111 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 PRKCEQ02156 737 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 MTFR1Q15390 333 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 ECM1Q16610 540 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 TRIM50Q86XT4 487 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 TPH2Q8IWU9 490 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 C4orf19Q8IY42 314 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 FMR1NBQ8N0W7 255 aaPredicted RBP12.13□□□□□ -0.47
USE1-204ENST00000594399 IQUBQ8NA54 791 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 ENGASEQ8NFI3 743 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 GLG1Q92896 1179 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 PCYT2Q99447 389 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 SMARCAD1Q9H4L7 1026 aa12.13□□□□□ -0.47
USE1-204ENST00000594399 PAK6Q9NQU5 681 aaPredicted RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms