RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 ITGA1P56199 1179 aa6.93□□□□□ -1.3
SMAD4-216ENST00000593223 IRF9Q00978 393 aa6.93□□□□□ -1.3
SMAD4-216ENST00000593223 TMEM132BQ14DG7 1078 aa6.93□□□□□ -1.3
SMAD4-216ENST00000593223 TTLL6Q8N841 843 aa6.93□□□□□ -1.3
SMAD4-216ENST00000593223 KYQ8NBH2 561 aa6.93□□□□□ -1.3
SMAD4-216ENST00000593223 DACT3Q96B18 629 aaPredicted RBP6.93□□□□□ -1.3
SMAD4-216ENST00000593223 ZSWIM3Q96MP5 696 aa6.93□□□□□ -1.3
SMAD4-216ENST00000593223 CLIC6Q96NY7 704 aa6.93□□□□□ -1.3
SMAD4-216ENST00000593223 TMEM209Q96SK2 561 aa6.93□□□□□ -1.3
SMAD4-216ENST00000593223 ARHGAP28Q9P2N2 729 aa6.93□□□□□ -1.3
SMAD4-216ENST00000593223 RBPJLQ9UBG7 517 aa6.93□□□□□ -1.3
SMAD4-216ENST00000593223 CBX4O00257 560 aa6.92□□□□□ -1.3
SMAD4-216ENST00000593223 PDE8AO60658 829 aa6.92□□□□□ -1.3
SMAD4-216ENST00000593223 GAS7O60861 476 aa6.92□□□□□ -1.3
SMAD4-216ENST00000593223 ENO2P09104 434 aaPredicted RBP6.92□□□□□ -1.3
SMAD4-216ENST00000593223 CFPP27918 469 aa6.92□□□□□ -1.3
SMAD4-216ENST00000593223 VMACQ2NL98 169 aa6.92□□□□□ -1.3
SMAD4-216ENST00000593223 CD276Q5ZPR3 534 aa6.92□□□□□ -1.3
SMAD4-216ENST00000593223 TTLL7Q6ZT98 887 aa6.92□□□□□ -1.3
SMAD4-216ENST00000593223 NOSTRINQ8IVI9 506 aa6.92□□□□□ -1.3
SMAD4-216ENST00000593223 PDGFDQ9GZP0 370 aaPredicted RBP6.92□□□□□ -1.3
SMAD4-216ENST00000593223 KCNH7Q9NS40 1196 aa6.92□□□□□ -1.3
SMAD4-216ENST00000593223 IFT57Q9NWB7 429 aa6.92□□□□□ -1.3
SMAD4-216ENST00000593223 KIF21AQ7Z4S6 1674 aa6.92□□□□□ -1.3
SMAD4-216ENST00000593223 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.91□□□□□ -1.3
SMAD4-216ENST00000593223 H7C1D1 291 aa6.91□□□□□ -1.3
SMAD4-216ENST00000593223 TRAF5O00463 557 aa6.91□□□□□ -1.3
SMAD4-216ENST00000593223 MECP2P51608 486 aaKnown RBP6.91□□□□□ -1.3
SMAD4-216ENST00000593223 SART3Q15020 963 aaKnown RBP6.91□□□□□ -1.3
SMAD4-216ENST00000593223 PCBP1Q15365 356 aaKnown RBP eCLIP6.91□□□□□ -1.3
SMAD4-216ENST00000593223 EGFLAMQ63HQ2 1017 aa6.91□□□□□ -1.3
SMAD4-216ENST00000593223 LIPIQ6XZB0 460 aa6.91□□□□□ -1.3
SMAD4-216ENST00000593223 LINC00482Q8N8I6 264 aa6.91□□□□□ -1.3
SMAD4-216ENST00000593223 LEO1Q8WVC0 666 aaPredicted RBP6.91□□□□□ -1.3
SMAD4-216ENST00000593223 PCIF1Q9H4Z3 704 aa6.91□□□□□ -1.3
SMAD4-216ENST00000593223 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.91□□□□□ -1.3
SMAD4-216ENST00000593223 HSPBP1Q9NZL4 362 aa6.91□□□□□ -1.3
SMAD4-216ENST00000593223 B4GALT6Q9UBX8 382 aa6.91□□□□□ -1.3
SMAD4-216ENST00000593223 CROTQ9UKG9 612 aa6.91□□□□□ -1.3
SMAD4-216ENST00000593223 C4BPAP04003 597 aaKnown RBP6.9□□□□□ -1.3
SMAD4-216ENST00000593223 POU3F2P20265 443 aaPredicted RBP6.9□□□□□ -1.3
SMAD4-216ENST00000593223 CDK11BP21127 795 aaKnown RBP6.9□□□□□ -1.3
SMAD4-216ENST00000593223 SCNN1BP51168 640 aa6.9□□□□□ -1.3
SMAD4-216ENST00000593223 HTRA3P83110 453 aa6.9□□□□□ -1.3
SMAD4-216ENST00000593223 PFKPQ01813 784 aa6.9□□□□□ -1.3
SMAD4-216ENST00000593223 DBPQ10586 325 aaPredicted RBP6.9□□□□□ -1.3
SMAD4-216ENST00000593223 ZNF174Q15697 407 aa6.9□□□□□ -1.3
SMAD4-216ENST00000593223 FSTL4Q6MZW2 842 aa6.9□□□□□ -1.3
SMAD4-216ENST00000593223 OTOP1Q7RTM1 612 aa6.9□□□□□ -1.3
SMAD4-216ENST00000593223 WRNIP1Q96S55 665 aa6.9□□□□□ -1.3
SMAD4-216ENST00000593223 SLC39A2Q9NP94 309 aa6.9□□□□□ -1.3
SMAD4-216ENST00000593223 DLL4Q9NR61 685 aa6.9□□□□□ -1.3
SMAD4-216ENST00000593223 B3GALT1Q9Y5Z6 326 aa6.9□□□□□ -1.3
SMAD4-216ENST00000593223 NCAPD3P42695 1498 aa6.9□□□□□ -1.31
SMAD4-216ENST00000593223 A0A087X0B3 334 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 FOXP2O15409 715 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 CYP7B1O75881 506 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 FBXO21O94952 628 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 ZBTB48P10074 688 aaPredicted RBP6.89□□□□□ -1.31
SMAD4-216ENST00000593223 HSP90B1P14625 803 aaKnown RBP6.89□□□□□ -1.31
SMAD4-216ENST00000593223 THBS2P35442 1172 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 GLRBP48167 497 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 KIF11P52732 1056 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 ADAM9Q13443 819 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 SEC23AQ15436 765 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 SKIDA1Q1XH10 827 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 PHF19Q5T6S3 580 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 PRAMEF18Q5VWM3 479 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 SAPCD2Q86UD0 394 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 PROSER1Q86XN7 944 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 KIF18BQ86Y91 864 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 ADGRG2Q8IZP9 1017 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 NXPE1Q8N323 547 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 ZNF526Q8TF50 670 aaPredicted RBP6.89□□□□□ -1.31
SMAD4-216ENST00000593223 MTFR1LQ9H019 292 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 NTMQ9P121 344 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 ARHGAP20Q9P2F6 1191 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 MAPRE3Q9UPY8 281 aa6.89□□□□□ -1.31
SMAD4-216ENST00000593223 ZNF839A8K0R7 811 aa6.88□□□□□ -1.31
SMAD4-216ENST00000593223 ZNF891A8MT65 544 aaPredicted RBP6.88□□□□□ -1.31
SMAD4-216ENST00000593223 GSG1L2A8MUP6 293 aa6.88□□□□□ -1.31
SMAD4-216ENST00000593223 MMEP08473 750 aa6.88□□□□□ -1.31
SMAD4-216ENST00000593223 ZSCAN22P10073 491 aaPredicted RBP6.88□□□□□ -1.31
SMAD4-216ENST00000593223 HERVK_113P62684 666 aa6.88□□□□□ -1.31
SMAD4-216ENST00000593223 SKOR2Q2VWA4 1001 aaPredicted RBP6.88□□□□□ -1.31
SMAD4-216ENST00000593223 VWA3BQ502W6 1294 aa6.88□□□□□ -1.31
SMAD4-216ENST00000593223 CT47A1Q5JQC4 288 aaPredicted RBP6.88□□□□□ -1.31
SMAD4-216ENST00000593223 CILP2Q8IUL8 1156 aa6.88□□□□□ -1.31
SMAD4-216ENST00000593223 DTX3Q8N9I9 347 aa6.88□□□□□ -1.31
SMAD4-216ENST00000593223 LINC01356Q8N9X3 169 aa6.88□□□□□ -1.31
SMAD4-216ENST00000593223 HIPK4Q8NE63 616 aa6.88□□□□□ -1.31
SMAD4-216ENST00000593223 OR2W6PQ8NHA6 318 aa6.88□□□□□ -1.31
SMAD4-216ENST00000593223 IGDCC4Q8TDY8 1250 aa6.88□□□□□ -1.31
SMAD4-216ENST00000593223 DLG3Q92796 817 aa6.88□□□□□ -1.31
SMAD4-216ENST00000593223 ERCC4Q92889 916 aaPredicted RBP6.88□□□□□ -1.31
SMAD4-216ENST00000593223 SPATA6Q9NWH7 488 aaPredicted RBP6.88□□□□□ -1.31
SMAD4-216ENST00000593223 WASF3Q9UPY6 502 aa6.88□□□□□ -1.31
SMAD4-216ENST00000593223 DISP3Q9P2K9 1392 aa6.87□□□□□ -1.31
SMAD4-216ENST00000593223 CADPSQ9ULU8 1353 aa6.87□□□□□ -1.31
SMAD4-216ENST00000593223 A0A1B0GTL3 188 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms