RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, humanhuman

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-216ENST00000592790 CD44P16070 742 aaKnown RBP3.84□□□□□ -1.8
VMP1-216ENST00000592790 ELF1P32519 619 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 GCKP35557 465 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 FXR2P51116 673 aaKnown RBP eCLIP3.84□□□□□ -1.82e-18■■■□□ 14.7
VMP1-216ENST00000592790 ZBTB16Q05516 673 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 DDR1Q08345 913 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 AP3B2Q13367 1082 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 SH2D4BQ5SQS7 431 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 NAA35Q5VZE5 725 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 AP1ARQ63HQ0 302 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 ANKRD40Q6AI12 368 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 TTI2Q6NXR4 508 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 NFRKBQ6P4R8 1299 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 CCDC62Q6P9F0 684 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 GSTA5Q7RTV2 222 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 TMC4Q7Z404 712 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 CCDC25Q86WR0 208 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 USP38Q8NB14 1042 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 LRRN4CLQ8ND94 238 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 CABLES1Q8TDN4 633 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 GPKOWQ92917 476 aaPredicted RBP eCLIP3.84□□□□□ -1.87e-23■■□□□ 12.4
VMP1-216ENST00000592790 HVCN1Q96D96 273 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 SGSM3Q96HU1 749 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 ZIM3Q96PE6 472 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 FERMT1Q9BQL6 677 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 FOXP3Q9BZS1 431 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 EPB41L4AQ9HCS5 686 aaPredicted RBP3.84□□□□□ -1.8
VMP1-216ENST00000592790 USP40Q9NVE5 1235 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 SLTMQ9NWH9 1034 aaKnown RBP eCLIP3.84□□□□□ -1.8
VMP1-216ENST00000592790 SEL1LQ9UBV2 794 aa3.84□□□□□ -1.8
VMP1-216ENST00000592790 ATP8B3O60423 1300 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 UBE4BO95155 1302 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 PITPNM2Q9BZ72 1349 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 BTNL10A8MVZ5 291 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 H0YCG3 227 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 DPYSL4O14531 572 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 NEBLO76041 1014 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 GCNT3O95395 438 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 FTCDO95954 541 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 HSPA9P38646 679 aaKnown RBP3.83□□□□□ -1.8
VMP1-216ENST00000592790 BPIFB4P59827 614 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 HERVK_113P62684 666 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 SLC7A5Q01650 507 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 SATB1Q01826 763 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 SEC23AQ15436 765 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 AOC3Q16853 763 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 LGSNQ5TDP6 509 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 HHATQ5VTY9 493 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 ZNF572Q7Z3I7 529 aaPredicted RBP3.83□□□□□ -1.8
VMP1-216ENST00000592790 ZSCAN29Q8IWY8 852 aaPredicted RBP3.83□□□□□ -1.8
VMP1-216ENST00000592790 TEX9Q8N6V9 391 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 ACTRT1Q8TDG2 376 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 ARHGEF1Q92888 912 aaKnown RBP3.83□□□□□ -1.8
VMP1-216ENST00000592790 KLHL29Q96CT2 875 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 PSTPIP2Q9H939 334 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 MLXIPQ9HAP2 919 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 SUCLA2Q9P2R7 463 aaPredicted RBP3.83□□□□□ -1.8
VMP1-216ENST00000592790 BIN2Q9UBW5 565 aaPredicted RBP3.83□□□□□ -1.8
VMP1-216ENST00000592790 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.83□□□□□ -1.8
VMP1-216ENST00000592790 PNMA6FA0A0J9YX94 578 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 TCRBV5S4A2TA0A5A2 114 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 PRPF6O94906 941 aaKnown RBP3.83□□□□□ -1.8
VMP1-216ENST00000592790 ECEL1O95672 775 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 MMEP08473 750 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 CLTAP09496 248 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 CXCR5P32302 372 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 USP11P51784 963 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 RNASE9P60153 205 aaKnown RBP3.83□□□□□ -1.8
VMP1-216ENST00000592790 TROAPQ12815 778 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 MAP3K21Q5TCX8 1036 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 CENPPQ6IPU0 288 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 HIBCHQ6NVY1 386 aaPredicted RBP3.83□□□□□ -1.8
VMP1-216ENST00000592790 BTNL9Q6UXG8 535 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 KRT26Q7Z3Y9 468 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 ANKRD23Q86SG2 305 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 TRIM42Q8IWZ5 723 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 NELFCDQ8IXH7 590 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 ANKRD13CQ8N6S4 541 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 FAM133AQ8N9E0 248 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 CCDC110Q8TBZ0 833 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 MYCBPAPQ8TBZ2 947 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 RFFLQ8WZ73 363 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 CENPTQ96BT3 561 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 CYFIP2Q96F07 1278 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 RBM17Q96I25 401 aaKnown RBP3.83□□□□□ -1.8
VMP1-216ENST00000592790 MFRPQ9BY79 579 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 IMPG2Q9BZV3 1241 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 RABEP2Q9H5N1 569 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 SENP1Q9P0U3 644 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 BCAP29Q9UHQ4 241 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 PCDHA6Q9UN73 950 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 ATP8A1Q9Y2Q0 1164 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 PCDHA8Q9Y5H6 950 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 ZNF804BA4D1E1 1349 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 PDXKO00764 312 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 EXOC3O60645 756 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 STAMBPO95630 424 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 SYF2O95926 243 aaKnown RBP3.83□□□□□ -1.8
VMP1-216ENST00000592790 PLA2G4BP0C869 781 aa3.83□□□□□ -1.8
VMP1-216ENST00000592790 ATF2P15336 505 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms