RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 SLC12A7Q9Y666 1083 aa13.61□□□□□ -0.23
LIG3-209ENST00000586435 SQORQ9Y6N5 450 aa13.61□□□□□ -0.23
LIG3-209ENST00000586435 RRN3P2A6NIE6 340 aa13.6□□□□□ -0.23
LIG3-209ENST00000586435 NCK2O43639 380 aa13.6□□□□□ -0.23
LIG3-209ENST00000586435 RXRAP19793 462 aa13.6□□□□□ -0.23
LIG3-209ENST00000586435 CTNNB1P35222 781 aa13.6□□□□□ -0.23
LIG3-209ENST00000586435 COL9A3Q14050 684 aaPredicted RBP13.6□□□□□ -0.23
LIG3-209ENST00000586435 NECTIN1Q15223 517 aa13.6□□□□□ -0.23
LIG3-209ENST00000586435 UBE2SQ16763 222 aa13.6□□□□□ -0.23
LIG3-209ENST00000586435 TCEAL5Q5H9L2 206 aa13.6□□□□□ -0.23
LIG3-209ENST00000586435 CREB3L3Q68CJ9 461 aa13.6□□□□□ -0.23
LIG3-209ENST00000586435 CMTR1Q8N1G2 835 aaKnown RBP13.6□□□□□ -0.23
LIG3-209ENST00000586435 FANCBQ8NB91 859 aa13.6□□□□□ -0.23
LIG3-209ENST00000586435 GLG1Q92896 1179 aa13.6□□□□□ -0.23
LIG3-209ENST00000586435 ZNF689Q96CS4 500 aaPredicted RBP13.6□□□□□ -0.23
LIG3-209ENST00000586435 ESYT1Q9BSJ8 1104 aa13.6□□□□□ -0.23
LIG3-209ENST00000586435 C11orf84Q9BUA3 381 aaPredicted RBP13.6□□□□□ -0.23
LIG3-209ENST00000586435 JPH1Q9HDC5 661 aaPredicted RBP13.6□□□□□ -0.23
LIG3-209ENST00000586435 PCDHA6Q9UN73 950 aa13.6□□□□□ -0.23
LIG3-209ENST00000586435 PCDHA8Q9Y5H6 950 aa13.6□□□□□ -0.23
LIG3-209ENST00000586435 CDY2AQ9Y6F7 541 aa13.6□□□□□ -0.23
LIG3-209ENST00000586435 NFASCO94856 1347 aa13.6□□□□□ -0.23
LIG3-209ENST00000586435 CNTNAP5Q8WYK1 1306 aa13.6□□□□□ -0.23
LIG3-209ENST00000586435 ENPP3O14638 875 aa13.59□□□□□ -0.23
LIG3-209ENST00000586435 MARK3P27448 753 aa13.59□□□□□ -0.23
LIG3-209ENST00000586435 BMPR1AP36894 532 aa13.59□□□□□ -0.23
LIG3-209ENST00000586435 MRPS6P82932 125 aaKnown RBP13.59□□□□□ -0.23
LIG3-209ENST00000586435 PPP1R18Q6NYC8 613 aa13.59□□□□□ -0.23
LIG3-209ENST00000586435 MICU3Q86XE3 530 aa13.59□□□□□ -0.23
LIG3-209ENST00000586435 DNAJB3Q8WWF6 145 aa13.59□□□□□ -0.23
LIG3-209ENST00000586435 TNPO1Q92973 898 aaKnown RBP13.59□□□□□ -0.23
LIG3-209ENST00000586435 PCYT2Q99447 389 aa13.59□□□□□ -0.23
LIG3-209ENST00000586435 FTHL17Q9BXU8 183 aa13.59□□□□□ -0.23
LIG3-209ENST00000586435 SLC9A2Q9UBY0 812 aa13.59□□□□□ -0.23
LIG3-209ENST00000586435 PRKAG3Q9UGI9 489 aa13.59□□□□□ -0.23
LIG3-209ENST00000586435 FAM50BQ9Y247 325 aa13.59□□□□□ -0.23
LIG3-209ENST00000586435 MYH9P35579 1960 aaKnown RBP13.58□□□□□ -0.24
LIG3-209ENST00000586435 EVPLQ92817 2033 aa13.58□□□□□ -0.24
LIG3-209ENST00000586435 MUC6Q6W4X9 2439 aa13.58□□□□□ -0.24
LIG3-209ENST00000586435 H3BQ06 376 aaPredicted RBP13.58□□□□□ -0.24
LIG3-209ENST00000586435 hCG_1984214I3L0E3 225 aa13.58□□□□□ -0.24
LIG3-209ENST00000586435 DGKIO75912 1065 aa13.58□□□□□ -0.24
LIG3-209ENST00000586435 INSRRP14616 1297 aa13.58□□□□□ -0.24
LIG3-209ENST00000586435 CTC1Q2NKJ3 1217 aa13.58□□□□□ -0.24
LIG3-209ENST00000586435 IER5Q5VY09 327 aa13.58□□□□□ -0.24
LIG3-209ENST00000586435 FAM43BQ6ZT52 329 aaPredicted RBP13.58□□□□□ -0.24
LIG3-209ENST00000586435 HEATR3Q7Z4Q2 680 aa13.58□□□□□ -0.24
LIG3-209ENST00000586435 CRIPAKQ8N1N5 446 aa13.58□□□□□ -0.24
LIG3-209ENST00000586435 ZNF713Q8N859 430 aaPredicted RBP13.58□□□□□ -0.24
LIG3-209ENST00000586435 MXRA8Q9BRK3 442 aa13.58□□□□□ -0.24
LIG3-209ENST00000586435 PLVAPQ9BX97 442 aa13.58□□□□□ -0.24
LIG3-209ENST00000586435 AZI2Q9H6S1 392 aa13.58□□□□□ -0.24
LIG3-209ENST00000586435 KCNH7Q9NS40 1196 aa13.58□□□□□ -0.24
LIG3-209ENST00000586435 RBM28Q9NW13 759 aaKnown RBP13.58□□□□□ -0.24
LIG3-209ENST00000586435 PKD2L1Q9P0L9 805 aa13.58□□□□□ -0.24
LIG3-209ENST00000586435 KDM3AQ9Y4C1 1321 aa13.58□□□□□ -0.24
LIG3-209ENST00000586435 WDR81Q562E7 1941 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 hCG_1642624A0A1W2PR95 340 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 PRR33A8MZF0 331 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 GRM6O15303 877 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 FOSP01100 380 aaPredicted RBP13.57□□□□□ -0.24
LIG3-209ENST00000586435 MMP1P03956 469 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 ALADP13716 330 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 HOXD11P31277 338 aaPredicted RBP13.57□□□□□ -0.24
LIG3-209ENST00000586435 SSTR3P32745 418 aaPredicted RBP13.57□□□□□ -0.24
LIG3-209ENST00000586435 SLC26A2P50443 739 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 BTG3Q14201 252 aaPredicted RBP13.57□□□□□ -0.24
LIG3-209ENST00000586435 WWC2Q6AWC2 1192 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 APOA5Q6Q788 366 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 PLPPR4Q7Z2D5 763 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 RAB11FIP4Q86YS3 637 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 CMTR2Q8IYT2 770 aaKnown RBP13.57□□□□□ -0.24
LIG3-209ENST00000586435 CCDC82Q8N4S0 544 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 LINC01599Q8WXQ3 324 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 P2RX5Q93086 422 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 SDF4Q9BRK5 362 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 LRRC2Q9BYS8 371 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 AGO3Q9H9G7 860 aaKnown RBP13.57□□□□□ -0.24
LIG3-209ENST00000586435 RIC8AQ9NPQ8 531 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 PCDHA2Q9Y5H9 948 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 TRPV2Q9Y5S1 764 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 IGSF9BQ9UPX0 1349 aa13.57□□□□□ -0.24
LIG3-209ENST00000586435 FNDC1Q4ZHG4 1894 aaPredicted RBP13.57□□□□□ -0.24
LIG3-209ENST00000586435 FAM86C2PA6NEL3 165 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 M0QZ92 97 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 ATG7O95352 703 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 CD52P31358 61 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 LTBRP36941 435 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 ACTR2P61160 394 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 IGBP1P78318 339 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 ZP2Q05996 745 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 FUT2Q10981 343 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 AP3B2Q13367 1082 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 PLCB4Q15147 1175 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 CEP55Q53EZ4 464 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 NAALADL2Q58DX5 795 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 RNF20Q5VTR2 975 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 TYW1BQ6NUM6 668 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 SYNE3Q6ZMZ3 975 aa13.56□□□□□ -0.24
LIG3-209ENST00000586435 NPAS4Q8IUM7 802 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms