RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 EYA4O95677 639 aa25.1■■□□□ 1.61
SHMT1-210ENST00000583780 PPFIA1Q13136 1202 aa25.1■■□□□ 1.61
SHMT1-210ENST00000583780 WTAPQ15007 396 aa25.1■■□□□ 1.61
SHMT1-210ENST00000583780 GRIK4Q16099 956 aa25.1■■□□□ 1.61
SHMT1-210ENST00000583780 NLRX1Q86UT6 975 aa25.1■■□□□ 1.61
SHMT1-210ENST00000583780 GIMAP8Q8ND71 665 aaPredicted RBP25.1■■□□□ 1.61
SHMT1-210ENST00000583780 SMARCC2Q8TAQ2 1214 aa25.1■■□□□ 1.61
SHMT1-210ENST00000583780 SPPL3Q8TCT6 385 aa25.1■■□□□ 1.61
SHMT1-210ENST00000583780 SEPT1Q8WYJ6 367 aa25.1■■□□□ 1.61
SHMT1-210ENST00000583780 P2RX5Q93086 422 aa25.1■■□□□ 1.61
SHMT1-210ENST00000583780 MFSD14AQ96MC6 490 aa25.1■■□□□ 1.61
SHMT1-210ENST00000583780 CLEC1BQ9P126 229 aa25.1■■□□□ 1.61
SHMT1-210ENST00000583780 CDY2AQ9Y6F7 541 aa25.1■■□□□ 1.61
SHMT1-210ENST00000583780 STXBP3O00186 592 aa25.09■■□□□ 1.61
SHMT1-210ENST00000583780 ADGRD2Q7Z7M1 963 aa25.09■■□□□ 1.61
SHMT1-210ENST00000583780 EDAQ92838 391 aa25.09■■□□□ 1.61
SHMT1-210ENST00000583780 ZBTB10Q96DT7 871 aa25.09■■□□□ 1.61
SHMT1-210ENST00000583780 POP1Q99575 1024 aaKnown RBP25.09■■□□□ 1.61
SHMT1-210ENST00000583780 TUBE1Q9UJT0 475 aa25.09■■□□□ 1.61
SHMT1-210ENST00000583780 MRPL42Q9Y6G3 142 aaKnown RBP25.09■■□□□ 1.61
SHMT1-210ENST00000583780 ERICH2A1L162 156 aa25.08■■□□□ 1.61
SHMT1-210ENST00000583780 CSPG5O95196 566 aa25.08■■□□□ 1.61
SHMT1-210ENST00000583780 ITGB1P05556 798 aa25.08■■□□□ 1.61
SHMT1-210ENST00000583780 ITGB5P18084 799 aa25.08■■□□□ 1.61
SHMT1-210ENST00000583780 ANTXR2P58335 489 aa25.08■■□□□ 1.61
SHMT1-210ENST00000583780 TSHZ1Q6ZSZ6 1077 aa25.08■■□□□ 1.61
SHMT1-210ENST00000583780 BMP8AQ7Z5Y6 402 aa25.08■■□□□ 1.61
SHMT1-210ENST00000583780 RSPH3Q86UC2 560 aa25.08■■□□□ 1.61
SHMT1-210ENST00000583780 GPRASP2Q96D09 838 aa25.08■■□□□ 1.61
SHMT1-210ENST00000583780 ERAP1Q9NZ08 941 aa25.08■■□□□ 1.61
SHMT1-210ENST00000583780 U3KPZ7 1027 aaPredicted RBP25.08■■□□□ 1.61
SHMT1-210ENST00000583780 E7EWF7 191 aa25.07■■□□□ 1.6
SHMT1-210ENST00000583780 MARK3P27448 753 aa25.07■■□□□ 1.6
SHMT1-210ENST00000583780 CD52P31358 61 aa25.07■■□□□ 1.6
SHMT1-210ENST00000583780 PCYT2Q99447 389 aa25.07■■□□□ 1.6
SHMT1-210ENST00000583780 PHOX2BQ99453 314 aa25.07■■□□□ 1.6
SHMT1-210ENST00000583780 SPZ1Q9BXG8 430 aa25.07■■□□□ 1.6
SHMT1-210ENST00000583780 SMARCA1P28370 1054 aa25.06■■□□□ 1.6
SHMT1-210ENST00000583780 MRPS6P82932 125 aaKnown RBP25.06■■□□□ 1.6
SHMT1-210ENST00000583780 NAALADL2Q58DX5 795 aa25.06■■□□□ 1.6
SHMT1-210ENST00000583780 CATIPQ7Z7H3 387 aa25.06■■□□□ 1.6
SHMT1-210ENST00000583780 CMTR2Q8IYT2 770 aaKnown RBP25.06■■□□□ 1.6
SHMT1-210ENST00000583780 KLHL23Q8NBE8 558 aa25.06■■□□□ 1.6
SHMT1-210ENST00000583780 NCOA7Q8NI08 942 aa25.06■■□□□ 1.6
SHMT1-210ENST00000583780 CUL5Q93034 780 aa25.06■■□□□ 1.6
SHMT1-210ENST00000583780 MAP3K14Q99558 947 aa25.06■■□□□ 1.6
SHMT1-210ENST00000583780 SMARCAD1Q9H4L7 1026 aa25.06■■□□□ 1.6
SHMT1-210ENST00000583780 UBIAD1Q9Y5Z9 338 aa25.06■■□□□ 1.6
SHMT1-210ENST00000583780 SQORQ9Y6N5 450 aa25.06■■□□□ 1.6
SHMT1-210ENST00000583780 PLXNA4Q9HCM2 1894 aa25.06■■□□□ 1.6
SHMT1-210ENST00000583780 INSRRP14616 1297 aa25.05■■□□□ 1.6
SHMT1-210ENST00000583780 IER5LQ5T953 404 aa25.05■■□□□ 1.6
SHMT1-210ENST00000583780 EFHBQ8N7U6 833 aa25.05■■□□□ 1.6
SHMT1-210ENST00000583780 RRP36Q96EU6 259 aaKnown RBP25.05■■□□□ 1.6
SHMT1-210ENST00000583780 GSPT1P15170 499 aaKnown RBP25.04■■□□□ 1.6
SHMT1-210ENST00000583780 COASYQ13057 564 aa25.04■■□□□ 1.6
SHMT1-210ENST00000583780 PRSS33Q8NF86 280 aa25.04■■□□□ 1.6
SHMT1-210ENST00000583780 GLG1Q92896 1179 aa25.04■■□□□ 1.6
SHMT1-210ENST00000583780 MYL10Q9BUA6 226 aa25.04■■□□□ 1.6
SHMT1-210ENST00000583780 LOC730098B7Z3J9 87 aa25.03■■□□□ 1.6
SHMT1-210ENST00000583780 NDUFV1P49821 464 aa25.03■■□□□ 1.6
SHMT1-210ENST00000583780 IGBP1P78318 339 aa25.03■■□□□ 1.6
SHMT1-210ENST00000583780 TRIM67Q6ZTA4 783 aa25.03■■□□□ 1.6
SHMT1-210ENST00000583780 NPAS4Q8IUM7 802 aa25.03■■□□□ 1.6
SHMT1-210ENST00000583780 MB21D2Q8IYB1 491 aaPredicted RBP25.03■■□□□ 1.6
SHMT1-210ENST00000583780 SRBD1Q8N5C6 995 aaKnown RBP25.03■■□□□ 1.6
SHMT1-210ENST00000583780 SMRP1Q8NCR6 262 aa25.03■■□□□ 1.6
SHMT1-210ENST00000583780 POF1BQ8WVV4 589 aa25.03■■□□□ 1.6
SHMT1-210ENST00000583780 CDHR1Q96JP9 859 aa25.03■■□□□ 1.6
SHMT1-210ENST00000583780 FTHL17Q9BXU8 183 aa25.03■■□□□ 1.6
SHMT1-210ENST00000583780 PADI3Q9ULW8 664 aa25.03■■□□□ 1.6
SHMT1-210ENST00000583780 ZDBF2Q9HCK1 2354 aa25.02■■□□□ 1.6
SHMT1-210ENST00000583780 RRN3P2A6NIE6 340 aa25.02■■□□□ 1.6
SHMT1-210ENST00000583780 GLP2RO95838 553 aa25.02■■□□□ 1.6
SHMT1-210ENST00000583780 PDE4AP27815 886 aa25.02■■□□□ 1.6
SHMT1-210ENST00000583780 GATMP50440 423 aa25.02■■□□□ 1.6
SHMT1-210ENST00000583780 CBX2Q14781 532 aaPredicted RBP25.02■■□□□ 1.6
SHMT1-210ENST00000583780 SART3Q15020 963 aaKnown RBP25.02■■□□□ 1.6
SHMT1-210ENST00000583780 IER5Q5VY09 327 aa25.02■■□□□ 1.6
SHMT1-210ENST00000583780 RALYLQ86SE5 291 aaKnown RBP25.02■■□□□ 1.6
SHMT1-210ENST00000583780 ZNF654Q8IZM8 581 aa25.02■■□□□ 1.6
SHMT1-210ENST00000583780 FAM49AQ9H0Q0 323 aaPredicted RBP25.02■■□□□ 1.6
SHMT1-210ENST00000583780 PSTPIP2Q9H939 334 aa25.02■■□□□ 1.6
SHMT1-210ENST00000583780 LY9Q9HBG7 655 aa25.02■■□□□ 1.6
SHMT1-210ENST00000583780 JADE2Q9NQC1 790 aa25.02■■□□□ 1.6
SHMT1-210ENST00000583780 PKD2L1Q9P0L9 805 aa25.02■■□□□ 1.6
SHMT1-210ENST00000583780 PCDHGC5Q9Y5F6 944 aa25.02■■□□□ 1.6
SHMT1-210ENST00000583780 FNDC1Q4ZHG4 1894 aaPredicted RBP25.02■■□□□ 1.6
SHMT1-210ENST00000583780 MAFGO15525 162 aa25.01■■□□□ 1.59
SHMT1-210ENST00000583780 PLEKHA8P1O95397 391 aa25.01■■□□□ 1.59
SHMT1-210ENST00000583780 CHMLP26374 656 aa25.01■■□□□ 1.59
SHMT1-210ENST00000583780 TMEM62Q0P6H9 643 aa25.01■■□□□ 1.59
SHMT1-210ENST00000583780 PAN2Q504Q3 1202 aaKnown RBP25.01■■□□□ 1.59
SHMT1-210ENST00000583780 CMTR1Q8N1G2 835 aaKnown RBP25.01■■□□□ 1.59
SHMT1-210ENST00000583780 TMX1Q9H3N1 280 aa25.01■■□□□ 1.59
SHMT1-210ENST00000583780 PCDHA2Q9Y5H9 948 aa25.01■■□□□ 1.59
SHMT1-210ENST00000583780 TMEM221A6NGB7 291 aa25■■□□□ 1.59
SHMT1-210ENST00000583780 M0R296 226 aa25■■□□□ 1.59
SHMT1-210ENST00000583780 NRIP1P48552 1158 aa25■■□□□ 1.59
SHMT1-210ENST00000583780 ZXDAP98168 799 aa25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms