RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ANKRD23Q86SG2 305 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 DRC7Q8IY82 874 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 FAM133AQ8N9E0 248 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 SYT2Q8N9I0 419 aaPredicted RBP11.72□□□□□ -0.53
SS18-217ENST00000580958 BANK1Q8NDB2 785 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 DNERQ8NFT8 737 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 NEK9Q8TD19 979 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 GTF3C2Q8WUA4 911 aaPredicted RBP11.72□□□□□ -0.53
SS18-217ENST00000580958 MRFAP1L1Q96HT8 127 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 INPP4AQ96PE3 977 aaPredicted RBP11.72□□□□□ -0.53
SS18-217ENST00000580958 IWS1Q96ST2 819 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 LXNQ9BS40 222 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 GTPBP4Q9BZE4 634 aaKnown RBP11.72□□□□□ -0.53
SS18-217ENST00000580958 XPO4Q9C0E2 1151 aaKnown RBP11.72□□□□□ -0.53
SS18-217ENST00000580958 SAMSN1Q9NSI8 373 aaKnown RBP11.72□□□□□ -0.53
SS18-217ENST00000580958 RWDD2AQ9UIY3 292 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 SLC45A1Q9Y2W3 748 aa11.72□□□□□ -0.53
SS18-217ENST00000580958 STAM2O75886 525 aa11.71□□□□□ -0.53
SS18-217ENST00000580958 RGS20O76081 388 aa11.71□□□□□ -0.53
SS18-217ENST00000580958 ZBTB48P10074 688 aaPredicted RBP11.71□□□□□ -0.53
SS18-217ENST00000580958 ZNF18P17022 549 aa11.71□□□□□ -0.53
SS18-217ENST00000580958 MUTP22033 750 aa11.71□□□□□ -0.53
SS18-217ENST00000580958 EHHADHQ08426 723 aa11.71□□□□□ -0.53
SS18-217ENST00000580958 RAD51AP2Q09MP3 1159 aa11.71□□□□□ -0.53
SS18-217ENST00000580958 STXBP2Q15833 593 aa11.71□□□□□ -0.53
SS18-217ENST00000580958 TPD52L1Q16890 204 aaPredicted RBP11.71□□□□□ -0.53
SS18-217ENST00000580958 GNPTABQ3T906 1256 aa11.71□□□□□ -0.53
SS18-217ENST00000580958 WDR78Q5VTH9 848 aa11.71□□□□□ -0.53
SS18-217ENST00000580958 CCDC65Q8IXS2 484 aa11.71□□□□□ -0.53
SS18-217ENST00000580958 KCTD17Q8N5Z5 321 aa11.71□□□□□ -0.53
SS18-217ENST00000580958 KIAA0895Q8NCT3 520 aa11.71□□□□□ -0.53
SS18-217ENST00000580958 PIGOQ8TEQ8 1089 aa11.71□□□□□ -0.53
SS18-217ENST00000580958 MMP19Q99542 508 aa11.71□□□□□ -0.53
SS18-217ENST00000580958 BHMT2Q9H2M3 363 aa11.71□□□□□ -0.53
SS18-217ENST00000580958 SLC39A2Q9NP94 309 aa11.71□□□□□ -0.53
SS18-217ENST00000580958 PANK4Q9NVE7 773 aa11.71□□□□□ -0.53
SS18-217ENST00000580958 WRAP73Q9P2S5 460 aaPredicted RBP11.71□□□□□ -0.53
SS18-217ENST00000580958 ADD3Q9UEY8 706 aaKnown RBP11.71□□□□□ -0.53
SS18-217ENST00000580958 NFASCO94856 1347 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 TRIM49BA6NDI0 452 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 SPATA31C2B4DYI2 1134 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 PSMA7O14818 248 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 ZBTB39O15060 712 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 MAFGO15525 162 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 CBFA2T2O43439 604 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 CCNE2O96020 404 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 SERPINC1P01008 464 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 PGK2P07205 417 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 P4HBP07237 508 aaKnown RBP11.7□□□□□ -0.54
SS18-217ENST00000580958 KCNA2P16389 499 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 CDK11BP21127 795 aaKnown RBP11.7□□□□□ -0.54
SS18-217ENST00000580958 CCNE1P24864 410 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 JAK3P52333 1124 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 KRT76Q01546 638 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 PSMD2Q13200 908 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 COBLL1Q53SF7 1204 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 HS1BP3Q53T59 392 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 CDKAL1Q5VV42 579 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 RASAL3Q86YV0 1011 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 FAM43AQ8N2R8 423 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 SHCBP1Q8NEM2 672 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 SMCR8Q8TEV9 937 aaPredicted RBP11.7□□□□□ -0.54
SS18-217ENST00000580958 DHTKD1Q96HY7 919 aaPredicted RBP11.7□□□□□ -0.54
SS18-217ENST00000580958 CDHR1Q96JP9 859 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 NACC1Q96RE7 527 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 RUSC1Q9BVN2 902 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 PORCNQ9H237 461 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 MROH8Q9H579 483 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 TCEAL9Q9UHQ7 104 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 SAMM50Q9Y512 469 aa11.7□□□□□ -0.54
SS18-217ENST00000580958 FRMD3A2A2Y4 597 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 GOLGA6L6A8MZA4 724 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 WDR64B1ANS9 1081 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 SORBS3O60504 671 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 EIF3JO75822 258 aaKnown RBP11.69□□□□□ -0.54
SS18-217ENST00000580958 EDNRBP24530 442 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 ICAM3P32942 547 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 PPP1R2P41236 205 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 UBASH3AP57075 661 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 GIT2Q14161 759 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 KCTD2Q14681 263 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 LRRC41Q15345 812 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 UGCGQ16739 394 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 FAM26FQ5R3K3 315 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 ZNF746Q6NUN9 644 aaPredicted RBP11.69□□□□□ -0.54
SS18-217ENST00000580958 RINT1Q6NUQ1 792 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 SEPT14Q6ZU15 432 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 ANKRD13CQ8N6S4 541 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 GPRC5AQ8NFJ5 357 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 P2RX5Q93086 422 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 FGD4Q96M96 766 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 PTPN18Q99952 460 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 REEP2Q9BRK0 252 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 ZHX3Q9H4I2 956 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 BCAS3Q9H6U6 928 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 ZSWIM4Q9H7M6 989 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 EFCC1Q9HA90 598 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.69□□□□□ -0.54
SS18-217ENST00000580958 TBC1D7Q9P0N9 293 aa11.69□□□□□ -0.54
SS18-217ENST00000580958 NRBP1Q9UHY1 535 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms