RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 PCDHA10Q9Y5I2 948 aa28.09■■■□□ 2.09
SHMT1-207ENST00000580002 MYMKA6NI61 221 aa28.08■■■□□ 2.09
SHMT1-207ENST00000580002 P4HBP07237 508 aaKnown RBP28.08■■■□□ 2.09
SHMT1-207ENST00000580002 PLA2G4BP0C869 781 aa28.08■■■□□ 2.09
SHMT1-207ENST00000580002 JAK3P52333 1124 aa28.08■■■□□ 2.09
SHMT1-207ENST00000580002 NEDD9Q14511 834 aa28.08■■■□□ 2.09
SHMT1-207ENST00000580002 TTLL4Q14679 1199 aa28.08■■■□□ 2.09
SHMT1-207ENST00000580002 CCDC60Q8IWA6 550 aaPredicted RBP28.08■■■□□ 2.09
SHMT1-207ENST00000580002 SH2D3AQ9BRG2 576 aa28.08■■■□□ 2.09
SHMT1-207ENST00000580002 ABHD16BQ9H3Z7 469 aa28.08■■■□□ 2.09
SHMT1-207ENST00000580002 GABBR1Q9UBS5 961 aa28.08■■■□□ 2.09
SHMT1-207ENST00000580002 TUBE1Q9UJT0 475 aa28.08■■■□□ 2.09
SHMT1-207ENST00000580002 NPHP3-ACAD11A0A0J9YXS1 232 aa28.07■■■□□ 2.08
SHMT1-207ENST00000580002 SMPD1P17405 629 aa28.07■■■□□ 2.08
SHMT1-207ENST00000580002 TYRO3Q06418 890 aa28.07■■■□□ 2.08
SHMT1-207ENST00000580002 TRIM32Q13049 653 aa28.07■■■□□ 2.08
SHMT1-207ENST00000580002 CCDC144BQ3MJ40 725 aa28.07■■■□□ 2.08
SHMT1-207ENST00000580002 ZNF296Q8WUU4 475 aaPredicted RBP28.07■■■□□ 2.08
SHMT1-207ENST00000580002 TRIB2Q92519 343 aa28.07■■■□□ 2.08
SHMT1-207ENST00000580002 POLD4Q9HCU8 107 aa28.07■■■□□ 2.08
SHMT1-207ENST00000580002 ZNF862O60290 1169 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 ZNF865P0CJ78 1059 aaPredicted RBP28.06■■■□□ 2.08
SHMT1-207ENST00000580002 SFNP31947 248 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 SARSP49591 514 aaKnown RBP28.06■■■□□ 2.08
SHMT1-207ENST00000580002 OLFML2BQ68BL8 750 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 METTL7BQ6UX53 244 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 SV2BQ7L1I2 683 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 DHX37Q8IY37 1157 aaKnown RBP28.06■■■□□ 2.08
SHMT1-207ENST00000580002 LENG1Q96BZ8 264 aaPredicted RBP28.06■■■□□ 2.08
SHMT1-207ENST00000580002 PCYT2Q99447 389 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 CUEDC2Q9H467 287 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 TCEAL9Q9UHQ7 104 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 DNM3Q9UQ16 869 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 GTPBP6O43824 516 aaPredicted RBP28.06■■■□□ 2.08
SHMT1-207ENST00000580002 ATG7O95352 703 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 BMP6P22004 513 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 QARSP47897 775 aaKnown RBP28.06■■■□□ 2.08
SHMT1-207ENST00000580002 SLC12A3P55017 1021 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 KIF22Q14807 665 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 KCNV1Q6PIU1 500 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 DYMQ7RTS9 669 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 MSL3Q8N5Y2 521 aaKnown RBP28.06■■■□□ 2.08
SHMT1-207ENST00000580002 SPATA20Q8TB22 786 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 BHMT2Q9H2M3 363 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 MAN1B1Q9UKM7 699 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 STK24Q9Y6E0 443 aa28.06■■■□□ 2.08
SHMT1-207ENST00000580002 SUPT20HL2P0C7V6 817 aa28.05■■■□□ 2.08
SHMT1-207ENST00000580002 ARHGAP1Q07960 439 aa28.05■■■□□ 2.08
SHMT1-207ENST00000580002 ARSHQ5FYA8 562 aa28.05■■■□□ 2.08
SHMT1-207ENST00000580002 SMAP1Q8IYB5 467 aaPredicted RBP28.05■■■□□ 2.08
SHMT1-207ENST00000580002 TRPV1Q8NER1 839 aa28.05■■■□□ 2.08
SHMT1-207ENST00000580002 TRIM9Q9C026 710 aa28.05■■■□□ 2.08
SHMT1-207ENST00000580002 SLC26A4O43511 780 aa28.04■■■□□ 2.08
SHMT1-207ENST00000580002 IRX5P78411 483 aaPredicted RBP28.04■■■□□ 2.08
SHMT1-207ENST00000580002 CACNB1Q02641 598 aaPredicted RBP28.04■■■□□ 2.08
SHMT1-207ENST00000580002 RAD51AP2Q09MP3 1159 aa28.04■■■□□ 2.08
SHMT1-207ENST00000580002 SASS6Q6UVJ0 657 aa28.04■■■□□ 2.08
SHMT1-207ENST00000580002 SPATA33Q96N06 139 aa28.04■■■□□ 2.08
SHMT1-207ENST00000580002 GPR20Q99678 358 aa28.04■■■□□ 2.08
SHMT1-207ENST00000580002 ZSWIM4Q9H7M6 989 aa28.04■■■□□ 2.08
SHMT1-207ENST00000580002 HTTP42858 3142 aa28.04■■■□□ 2.08
SHMT1-207ENST00000580002 KLRC4O43908 158 aa28.04■■■□□ 2.08
SHMT1-207ENST00000580002 STBD1O95210 358 aa28.04■■■□□ 2.08
SHMT1-207ENST00000580002 PSAPP07602 524 aa28.04■■■□□ 2.08
SHMT1-207ENST00000580002 ATP4AP20648 1035 aa28.04■■■□□ 2.08
SHMT1-207ENST00000580002 GIMAP8Q8ND71 665 aaPredicted RBP28.04■■■□□ 2.08
SHMT1-207ENST00000580002 SMARCE1Q969G3 411 aa28.04■■■□□ 2.08
SHMT1-207ENST00000580002 EYA4O95677 639 aa28.03■■■□□ 2.08
SHMT1-207ENST00000580002 XRCC5P13010 732 aaKnown RBP28.03■■■□□ 2.08
SHMT1-207ENST00000580002 ELNP15502 786 aa28.03■■■□□ 2.08
SHMT1-207ENST00000580002 PSMC5P62195 406 aa28.03■■■□□ 2.08
SHMT1-207ENST00000580002 UTP14CQ5TAP6 766 aaKnown RBP28.03■■■□□ 2.08
SHMT1-207ENST00000580002 NT5DC1Q5TFE4 455 aa28.03■■■□□ 2.08
SHMT1-207ENST00000580002 MIS18BP1Q6P0N0 1132 aa28.03■■■□□ 2.08
SHMT1-207ENST00000580002 RDM1Q8NG50 284 aa28.03■■■□□ 2.08
SHMT1-207ENST00000580002 C7orf25Q9BPX7 421 aa28.03■■■□□ 2.08
SHMT1-207ENST00000580002 HOOK1Q9UJC3 728 aaKnown RBP28.03■■■□□ 2.08
SHMT1-207ENST00000580002 BACH1O14867 736 aa28.02■■■□□ 2.08
SHMT1-207ENST00000580002 CYP11B2P19099 503 aa28.02■■■□□ 2.08
SHMT1-207ENST00000580002 TCF7P36402 384 aaPredicted RBP28.02■■■□□ 2.08
SHMT1-207ENST00000580002 GPBP1Q86WP2 473 aa28.02■■■□□ 2.08
SHMT1-207ENST00000580002 TRIM50Q86XT4 487 aa28.02■■■□□ 2.08
SHMT1-207ENST00000580002 DNAJC5GQ8N7S2 189 aa28.02■■■□□ 2.08
SHMT1-207ENST00000580002 SYT2Q8N9I0 419 aaPredicted RBP28.02■■■□□ 2.08
SHMT1-207ENST00000580002 NEK9Q8TD19 979 aa28.02■■■□□ 2.08
SHMT1-207ENST00000580002 DDX12PQ92771 950 aa28.02■■■□□ 2.08
SHMT1-207ENST00000580002 NACC1Q96RE7 527 aa28.02■■■□□ 2.08
SHMT1-207ENST00000580002 RUSC1Q9BVN2 902 aa28.02■■■□□ 2.08
SHMT1-207ENST00000580002 SRRDQ9UH36 339 aa28.02■■■□□ 2.08
SHMT1-207ENST00000580002 FKTNO75072 461 aa28.01■■■□□ 2.08
SHMT1-207ENST00000580002 DPCR1Q3MIW9 517 aa28.01■■■□□ 2.08
SHMT1-207ENST00000580002 PLA2G4FQ68DD2 849 aa28.01■■■□□ 2.08
SHMT1-207ENST00000580002 C11orf57Q6ZUT1 292 aaPredicted RBP28.01■■■□□ 2.08
SHMT1-207ENST00000580002 SEPT1Q8WYJ6 367 aa28.01■■■□□ 2.08
SHMT1-207ENST00000580002 TSPY26PQ9H489 355 aa28.01■■■□□ 2.08
SHMT1-207ENST00000580002 SAGE1Q9NXZ1 904 aa28.01■■■□□ 2.08
SHMT1-207ENST00000580002 IGKV6D-21A0A0A0MT36 114 aa28.01■■■□□ 2.07
SHMT1-207ENST00000580002 RPN1P04843 607 aaKnown RBP28.01■■■□□ 2.07
SHMT1-207ENST00000580002 NPEPPSP55786 919 aa28.01■■■□□ 2.07
SHMT1-207ENST00000580002 DUSP28Q4G0W2 176 aa28.01■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms